Transcription factor | Sry | ||||||||
Model | SRY_MOUSE.H11MO.0.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 9 | ||||||||
Quality | B | ||||||||
Motif rank | 0 | ||||||||
Consensus | bWTTGTWWh | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 108 | ||||||||
TF family | SOX-related factors {4.1.1} | ||||||||
TF subfamily | Group A {4.1.1.1} | ||||||||
MGI | MGI:98660 | ||||||||
EntrezGene | GeneID:21674 (SSTAR profile) | ||||||||
UniProt ID | SRY_MOUSE | ||||||||
UniProt AC | Q05738 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Sry expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 11.267 | 30.82 | 15.228 | 50.685 |
02 | 39.6 | 3.96 | 4.805 | 59.634 |
03 | 8.417 | 0.497 | 4.457 | 94.628 |
04 | 10.257 | 0.497 | 3.264 | 93.982 |
05 | 0.0 | 7.92 | 98.29 | 1.79 |
06 | 5.965 | 0.0 | 3.778 | 98.256 |
07 | 20.795 | 4.341 | 3.679 | 79.186 |
08 | 28.151 | 10.224 | 7.539 | 62.085 |
09 | 36.602 | 26.131 | 2.834 | 42.434 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.818 | 0.127 | -0.541 | 0.61 |
02 | 0.37 | -1.703 | -1.551 | 0.769 |
03 | -1.078 | -2.827 | -1.611 | 1.224 |
04 | -0.902 | -2.827 | -1.849 | 1.217 |
05 | -3.181 | -1.131 | 1.261 | -2.253 |
06 | -1.373 | -3.181 | -1.739 | 1.261 |
07 | -0.249 | -1.631 | -1.759 | 1.048 |
08 | 0.04 | -0.905 | -1.174 | 0.809 |
09 | 0.293 | -0.031 | -1.951 | 0.437 |