Model info
| Transcription factor | STAT1 (GeneCards) | ||||||||
| Model | STAT1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hbhnYTTCCnRGAARhShb | ||||||||
| Best auROC (human) | 0.987 | ||||||||
| Best auROC (mouse) | 0.91 | ||||||||
| Peak sets in benchmark (human) | 37 | ||||||||
| Peak sets in benchmark (mouse) | 128 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | STAT factors {6.2.1} | ||||||||
| TF subfamily | STAT1 {6.2.1.0.1} | ||||||||
| HGNC | HGNC:11362 | ||||||||
| EntrezGene | GeneID:6772 (SSTAR profile) | ||||||||
| UniProt ID | STAT1_HUMAN | ||||||||
| UniProt AC | P42224 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | STAT1 expression | ||||||||
| ReMap ChIP-seq dataset list | STAT1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 101.0 | 214.0 | 60.0 | 125.0 |
| 02 | 47.0 | 284.0 | 85.0 | 84.0 |
| 03 | 66.0 | 278.0 | 55.0 | 101.0 |
| 04 | 147.0 | 178.0 | 102.0 | 73.0 |
| 05 | 43.0 | 103.0 | 50.0 | 304.0 |
| 06 | 1.0 | 8.0 | 2.0 | 489.0 |
| 07 | 4.0 | 3.0 | 6.0 | 487.0 |
| 08 | 15.0 | 482.0 | 1.0 | 2.0 |
| 09 | 19.0 | 411.0 | 1.0 | 69.0 |
| 10 | 117.0 | 152.0 | 71.0 | 160.0 |
| 11 | 134.0 | 13.0 | 341.0 | 12.0 |
| 12 | 16.0 | 7.0 | 402.0 | 75.0 |
| 13 | 472.0 | 19.0 | 5.0 | 4.0 |
| 14 | 494.0 | 1.0 | 2.0 | 3.0 |
| 15 | 290.0 | 53.0 | 116.0 | 41.0 |
| 16 | 137.0 | 98.0 | 55.0 | 210.0 |
| 17 | 29.0 | 294.0 | 124.0 | 53.0 |
| 18 | 171.0 | 131.0 | 34.0 | 164.0 |
| 19 | 67.0 | 267.0 | 69.0 | 97.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.21 | 0.533 | -0.721 | 0.0 |
| 02 | -0.958 | 0.814 | -0.38 | -0.392 |
| 03 | -0.628 | 0.793 | -0.805 | -0.21 |
| 04 | 0.16 | 0.35 | -0.201 | -0.529 |
| 05 | -1.044 | -0.191 | -0.898 | 0.881 |
| 06 | -3.903 | -2.584 | -3.573 | 1.355 |
| 07 | -3.126 | -3.325 | -2.819 | 1.351 |
| 08 | -2.034 | 1.34 | -3.903 | -3.573 |
| 09 | -1.818 | 1.182 | -3.903 | -0.584 |
| 10 | -0.065 | 0.193 | -0.556 | 0.244 |
| 11 | 0.069 | -2.163 | 0.996 | -2.234 |
| 12 | -1.975 | -2.694 | 1.16 | -0.503 |
| 13 | 1.32 | -1.818 | -2.961 | -3.126 |
| 14 | 1.365 | -3.903 | -3.573 | -3.325 |
| 15 | 0.835 | -0.841 | -0.074 | -1.09 |
| 16 | 0.091 | -0.24 | -0.805 | 0.514 |
| 17 | -1.421 | 0.848 | -0.008 | -0.841 |
| 18 | 0.31 | 0.046 | -1.27 | 0.269 |
| 19 | -0.613 | 0.752 | -0.584 | -0.25 |