We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR5A1
(GeneCards)
ModelSTF1_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
B
Motif rank
0
ConsensusnbbYCAAGGYCRn
Best auROC (human)0.775
Best auROC (mouse)0.908
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)2
Aligned words500
TF familyFTZ-F1-related receptors (NR5) {2.1.5}
TF subfamilyFTZ-F1 (SF-1) (NR5A1) {2.1.5.0.1}
HGNCHGNC:7983
EntrezGeneGeneID:2516
(SSTAR profile)
UniProt IDSTF1_HUMAN
UniProt ACQ13285
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.822510000000001
0.0005 10.333635
0.0001 14.46541
GTEx tissue expression atlas NR5A1 expression
ReMap ChIP-seq dataset list NR5A1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0130.021.0101.018.031.024.026.023.013.017.056.018.09.033.050.030.0
024.026.031.022.016.034.08.037.09.064.079.081.04.033.019.033.0
032.019.01.011.03.078.01.075.011.071.01.054.07.056.01.0109.0
040.023.00.00.00.0218.03.03.00.04.00.00.01.0239.08.01.0
051.00.00.00.0465.04.09.06.09.00.01.01.03.01.00.00.0
06457.00.019.02.04.00.01.00.08.02.00.00.04.00.02.01.0
073.01.0469.00.00.01.01.00.01.00.021.00.00.00.03.00.0
080.01.03.00.00.01.01.00.03.02.0488.01.00.00.00.00.0
092.00.00.01.02.02.00.00.061.0197.07.0227.00.01.00.00.0
104.056.01.04.01.0184.02.013.00.07.00.00.02.0211.04.011.0
114.02.01.00.0375.09.059.015.05.00.01.01.09.05.011.03.0
1259.0129.0125.080.05.05.01.05.014.025.024.09.01.04.09.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.04-0.3921.165-0.543-0.008-0.26-0.181-0.302-0.86-0.5990.578-0.543-1.2150.0540.465-0.04
02-1.975-0.181-0.008-0.346-0.6580.083-1.3280.167-1.2150.7110.920.945-1.9750.054-0.490.054
03-2.584-0.49-3.126-1.022-2.2340.907-3.1260.868-1.0220.814-3.1260.542-1.4540.578-3.1261.241
04-4.4-0.302-4.4-4.4-4.41.932-2.234-2.234-4.4-1.975-4.4-4.4-3.1262.024-1.328-3.126
05-3.126-4.4-4.4-4.42.689-1.975-1.215-1.6-1.215-4.4-3.126-3.126-2.234-3.126-4.4-4.4
062.671-4.4-0.49-2.584-1.975-4.4-3.126-4.4-1.328-2.584-4.4-4.4-1.975-4.4-2.584-3.126
07-2.234-3.1262.697-4.4-4.4-3.126-3.126-4.4-3.126-4.4-0.392-4.4-4.4-4.4-2.234-4.4
08-4.4-3.126-2.234-4.4-4.4-3.126-3.126-4.4-2.234-2.5842.737-3.126-4.4-4.4-4.4-4.4
09-2.584-4.4-4.4-3.126-2.584-2.584-4.4-4.40.6631.831-1.4541.972-4.4-3.126-4.4-4.4
10-1.9750.578-3.126-1.975-3.1261.763-2.584-0.86-4.4-1.454-4.4-4.4-2.5841.899-1.975-1.022
11-1.975-2.584-3.126-4.42.474-1.2150.63-0.721-1.77-4.4-3.126-3.126-1.215-1.77-1.022-2.234
120.631.4081.3770.932-1.77-1.77-3.126-1.77-0.788-0.22-0.26-1.215-3.126-1.975-1.215-1.77