STF1_HUMAN.H11MO.0.B motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

NR5A1
(GeneCards)

Model

STF1_HUMAN.H11MO.0.B

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

11

Quality

B

Motif rank

0

Consensus

bbYCAAGGYCW

Best auROC (human)

0.759

Best auROC (mouse)

0.898

Peak sets in benchmark (human)

1

Peak sets in benchmark (mouse)

2

Aligned words

500

TF family

FTZ-F1-related receptors (NR5) {2.1.5}

TF subfamily

FTZ-F1 (SF-1) (NR5A1) {2.1.5.0.1}

HGNC

EntrezGene

GeneID:2516
(SSTAR profile)

UniProt ID

UniProt AC

Q13285
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.938269999999999
0.0005	5.81686
0.0001	7.752504999999999

GTEx tissue expression atlas

NR5A1 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

PCM

	A	C	G	T
01	67.0	123.0	210.0	100.0
02	27.0	196.0	90.0	187.0
03	28.0	220.0	14.0	238.0
04	3.0	459.0	28.0	10.0
05	420.0	58.0	14.0	8.0
06	459.0	2.0	36.0	3.0
07	20.0	1.0	474.0	5.0
08	13.0	20.0	457.0	10.0
09	51.0	225.0	19.0	205.0
10	11.0	450.0	4.0	35.0
11	378.0	33.0	37.0	52.0

PWM

	A	C	G	T
01	-0.613	-0.016	0.514	-0.22
02	-1.489	0.445	-0.324	0.399
03	-1.454	0.56	-2.096	0.638
04	-3.325	1.292	-1.454	-2.394
05	1.203	-0.754	-2.096	-2.584
06	1.292	-3.573	-1.215	-3.325
07	-1.77	-3.903	1.324	-2.961
08	-2.163	-1.77	1.287	-2.394
09	-0.879	0.582	-1.818	0.49
10	-2.311	1.272	-3.126	-1.242
11	1.098	-1.298	-1.189	-0.86