We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNR5A1
(GeneCards)
ModelSTF1_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusbbYCAAGGYCW
Best auROC (human)0.759
Best auROC (mouse)0.898
Peak sets in benchmark (human)1
Peak sets in benchmark (mouse)2
Aligned words500
TF familyFTZ-F1-related receptors (NR5) {2.1.5}
TF subfamilyFTZ-F1 (SF-1) (NR5A1) {2.1.5.0.1}
HGNCHGNC:7983
EntrezGeneGeneID:2516
(SSTAR profile)
UniProt IDSTF1_HUMAN
UniProt ACQ13285
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.938269999999999
0.0005 5.81686
0.0001 7.752504999999999
GTEx tissue expression atlas NR5A1 expression
ReMap ChIP-seq dataset list NR5A1 datasets
Motifs in JASPAR
PCM
ACGT
0167.0123.0210.0100.0
0227.0196.090.0187.0
0328.0220.014.0238.0
043.0459.028.010.0
05420.058.014.08.0
06459.02.036.03.0
0720.01.0474.05.0
0813.020.0457.010.0
0951.0225.019.0205.0
1011.0450.04.035.0
11378.033.037.052.0
PWM
ACGT
01-0.613-0.0160.514-0.22
02-1.4890.445-0.3240.399
03-1.4540.56-2.0960.638
04-3.3251.292-1.454-2.394
051.203-0.754-2.096-2.584
061.292-3.573-1.215-3.325
07-1.77-3.9031.324-2.961
08-2.163-1.771.287-2.394
09-0.8790.582-1.8180.49
10-2.3111.272-3.126-1.242
111.098-1.298-1.189-0.86