We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRBPJ
(GeneCards)
ModelSUH_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnbYSTGRGAAvn
Best auROC (human)0.952
Best auROC (mouse)0.956
Peak sets in benchmark (human)25
Peak sets in benchmark (mouse)6
Aligned words521
TF familyCSL-related factors {6.1.4}
TF subfamilyM {6.1.4.1}
HGNCHGNC:5724
EntrezGeneGeneID:3516
(SSTAR profile)
UniProt IDSUH_HUMAN
UniProt ACQ06330
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.582640000000001
0.0005 12.15334
0.0001 16.017525
GTEx tissue expression atlas RBPJ expression
ReMap ChIP-seq dataset list RBPJ datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0110.048.040.026.020.070.06.023.05.056.061.018.04.042.058.013.0
020.020.07.012.06.0101.09.0100.04.077.018.066.01.029.030.020.0
032.03.06.00.058.071.092.06.08.015.038.03.017.027.0148.06.0
040.00.00.085.01.00.00.0115.00.01.02.0281.00.00.00.015.0
050.00.01.00.00.00.01.00.00.00.02.00.01.00.0494.01.0
060.00.01.00.00.00.00.00.0155.00.0293.050.01.00.00.00.0
070.00.0154.02.00.00.00.00.02.01.0289.02.00.00.050.00.0
082.00.00.00.01.00.00.00.0490.00.01.02.04.00.00.00.0
09442.04.051.00.00.00.00.00.01.00.00.00.02.00.00.00.0
10194.0153.061.037.02.01.00.01.014.026.02.09.00.00.00.00.0
1170.042.065.033.064.038.014.064.016.010.019.018.07.08.016.016.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.1140.4250.244-0.181-0.4390.8-1.6-0.302-1.770.5780.663-0.543-1.9750.2930.613-0.86
02-4.4-0.439-1.454-0.938-1.61.165-1.2151.155-1.9750.894-0.5430.741-3.126-0.074-0.04-0.439
03-2.584-2.234-1.6-4.40.6130.8141.072-1.6-1.328-0.7210.193-2.234-0.599-0.1441.545-1.6
04-4.4-4.4-4.40.993-3.126-4.4-4.41.294-4.4-3.126-2.5842.185-4.4-4.4-4.4-0.721
05-4.4-4.4-3.126-4.4-4.4-4.4-3.126-4.4-4.4-4.4-2.584-4.4-3.126-4.42.749-3.126
06-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.41.592-4.42.2270.465-3.126-4.4-4.4-4.4
07-4.4-4.41.585-2.584-4.4-4.4-4.4-4.4-2.584-3.1262.213-2.584-4.4-4.40.465-4.4
08-2.584-4.4-4.4-4.4-3.126-4.4-4.4-4.42.741-4.4-3.126-2.584-1.975-4.4-4.4-4.4
092.638-1.9750.485-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-2.584-4.4-4.4-4.4
101.8151.5790.6630.167-2.584-3.126-4.4-3.126-0.788-0.181-2.584-1.215-4.4-4.4-4.4-4.4
110.80.2930.7260.0540.7110.193-0.7880.711-0.658-1.114-0.49-0.543-1.454-1.328-0.658-0.658