We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRBPJ
(GeneCards)
ModelSUH_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusvbbSWGRGAAv
Best auROC (human)0.925
Best auROC (mouse)0.973
Peak sets in benchmark (human)25
Peak sets in benchmark (mouse)6
Aligned words500
TF familyCSL-related factors {6.1.4}
TF subfamilyM {6.1.4.1}
HGNCHGNC:5724
EntrezGeneGeneID:3516
(SSTAR profile)
UniProt IDSUH_HUMAN
UniProt ACQ06330
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.014525
0.0005 5.852645000000001
0.0001 7.438880000000001
GTEx tissue expression atlas RBPJ expression
ReMap ChIP-seq dataset list RBPJ datasets
Motifs in JASPAR
MA1116.1 (RBPJ; Homo sapiens)
PCM
ACGT
01158.090.0180.072.0
0219.0148.0240.093.0
0326.0243.0106.0125.0
0432.0157.0301.010.0
0581.045.013.0361.0
0610.01.0479.010.0
07105.04.0365.026.0
0827.02.0470.01.0
09492.03.04.01.0
10379.09.0106.06.0
11208.0158.0111.023.0
PWM
ACGT
010.232-0.3240.361-0.543
02-1.8180.1670.646-0.291
03-1.5250.659-0.1630.0
04-1.3280.2250.872-2.394
05-0.427-1.0-2.1631.053
06-2.394-3.9031.334-2.394
07-0.172-3.1261.063-1.525
08-1.489-3.5731.315-3.903
091.361-3.325-3.126-3.903
101.101-2.484-0.163-2.819
110.5040.232-0.117-1.64