Model info
| Transcription factor | RBPJ (GeneCards) | ||||||||
| Model | SUH_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vbbSWGRGAAv | ||||||||
| Best auROC (human) | 0.925 | ||||||||
| Best auROC (mouse) | 0.973 | ||||||||
| Peak sets in benchmark (human) | 25 | ||||||||
| Peak sets in benchmark (mouse) | 6 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | CSL-related factors {6.1.4} | ||||||||
| TF subfamily | M {6.1.4.1} | ||||||||
| HGNC | HGNC:5724 | ||||||||
| EntrezGene | GeneID:3516 (SSTAR profile) | ||||||||
| UniProt ID | SUH_HUMAN | ||||||||
| UniProt AC | Q06330 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RBPJ expression | ||||||||
| ReMap ChIP-seq dataset list | RBPJ datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 158.0 | 90.0 | 180.0 | 72.0 |
| 02 | 19.0 | 148.0 | 240.0 | 93.0 |
| 03 | 26.0 | 243.0 | 106.0 | 125.0 |
| 04 | 32.0 | 157.0 | 301.0 | 10.0 |
| 05 | 81.0 | 45.0 | 13.0 | 361.0 |
| 06 | 10.0 | 1.0 | 479.0 | 10.0 |
| 07 | 105.0 | 4.0 | 365.0 | 26.0 |
| 08 | 27.0 | 2.0 | 470.0 | 1.0 |
| 09 | 492.0 | 3.0 | 4.0 | 1.0 |
| 10 | 379.0 | 9.0 | 106.0 | 6.0 |
| 11 | 208.0 | 158.0 | 111.0 | 23.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.232 | -0.324 | 0.361 | -0.543 |
| 02 | -1.818 | 0.167 | 0.646 | -0.291 |
| 03 | -1.525 | 0.659 | -0.163 | 0.0 |
| 04 | -1.328 | 0.225 | 0.872 | -2.394 |
| 05 | -0.427 | -1.0 | -2.163 | 1.053 |
| 06 | -2.394 | -3.903 | 1.334 | -2.394 |
| 07 | -0.172 | -3.126 | 1.063 | -1.525 |
| 08 | -1.489 | -3.573 | 1.315 | -3.903 |
| 09 | 1.361 | -3.325 | -3.126 | -3.903 |
| 10 | 1.101 | -2.484 | -0.163 | -2.819 |
| 11 | 0.504 | 0.232 | -0.117 | -1.64 |