We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRbpj
ModelSUH_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusbbSTGRGAAh
Best auROC (human)0.952
Best auROC (mouse)0.958
Peak sets in benchmark (human)25
Peak sets in benchmark (mouse)6
Aligned words510
TF familyCSL-related factors {6.1.4}
TF subfamilyM {6.1.4.1}
MGIMGI:96522
EntrezGeneGeneID:19664
(SSTAR profile)
UniProt IDSUH_MOUSE
UniProt ACP31266
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.576080000000001
0.0005 12.669985
0.0001 15.833549999999999
GTEx tissue expression atlas Rbpj expression
Motifs in JASPAR
MA1116.1 (RBPJ; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
015.031.013.017.05.082.09.055.08.087.017.069.03.046.028.025.0
029.05.07.00.054.077.0106.09.010.021.036.00.013.025.0124.04.0
033.00.02.081.02.01.03.0122.00.01.00.0272.01.00.01.011.0
040.01.04.01.00.02.00.00.00.01.05.00.04.02.0480.00.0
050.00.02.02.00.00.06.00.0166.01.0266.056.00.00.01.00.0
060.01.0164.01.00.00.01.00.00.00.0272.03.00.00.058.00.0
070.00.00.00.00.00.01.00.0486.01.07.01.03.01.00.00.0
08434.015.039.01.01.00.01.00.06.01.01.00.01.00.00.00.0
09152.0148.063.079.04.06.03.03.013.019.03.06.01.00.00.00.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.77-0.008-0.86-0.599-1.770.957-1.2150.56-1.3281.016-0.5990.785-2.2340.383-0.108-0.22
02-1.215-1.77-1.454-4.40.5420.8941.213-1.215-1.114-0.3920.14-4.4-0.86-0.221.369-1.975
03-2.234-4.4-2.5840.945-2.584-3.126-2.2341.353-4.4-3.126-4.42.153-3.126-4.4-3.126-1.022
04-4.4-3.126-1.975-3.126-4.4-2.584-4.4-4.4-4.4-3.126-1.77-4.4-1.975-2.5842.72-4.4
05-4.4-4.4-2.584-2.584-4.4-4.4-1.6-4.41.66-3.1262.1310.578-4.4-4.4-3.126-4.4
06-4.4-3.1261.648-3.126-4.4-4.4-3.126-4.4-4.4-4.42.153-2.234-4.4-4.40.613-4.4
07-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.42.733-3.126-1.454-3.126-2.234-3.126-4.4-4.4
082.62-0.7210.219-3.126-3.126-4.4-3.126-4.4-1.6-3.126-3.126-4.4-3.126-4.4-4.4-4.4
091.5721.5450.6950.92-1.975-1.6-2.234-2.234-0.86-0.49-2.234-1.6-3.126-4.4-4.4-4.4