Model info
| Transcription factor | Rbpj | ||||||||
| Model | SUH_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bbbTGRGAAvv | ||||||||
| Best auROC (human) | 0.939 | ||||||||
| Best auROC (mouse) | 0.973 | ||||||||
| Peak sets in benchmark (human) | 25 | ||||||||
| Peak sets in benchmark (mouse) | 6 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | CSL-related factors {6.1.4} | ||||||||
| TF subfamily | M {6.1.4.1} | ||||||||
| MGI | MGI:96522 | ||||||||
| EntrezGene | GeneID:19664 (SSTAR profile) | ||||||||
| UniProt ID | SUH_MOUSE | ||||||||
| UniProt AC | P31266 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rbpj expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 51.0 | 165.0 | 177.0 | 107.0 |
| 02 | 34.0 | 225.0 | 105.0 | 136.0 |
| 03 | 47.0 | 198.0 | 207.0 | 48.0 |
| 04 | 30.0 | 10.0 | 15.0 | 445.0 |
| 05 | 2.0 | 5.0 | 478.0 | 15.0 |
| 06 | 67.0 | 2.0 | 379.0 | 52.0 |
| 07 | 5.0 | 13.0 | 480.0 | 2.0 |
| 08 | 430.0 | 6.0 | 61.0 | 3.0 |
| 09 | 452.0 | 2.0 | 32.0 | 14.0 |
| 10 | 249.0 | 98.0 | 99.0 | 54.0 |
| 11 | 207.0 | 105.0 | 116.0 | 72.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.879 | 0.275 | 0.344 | -0.153 |
| 02 | -1.27 | 0.582 | -0.172 | 0.083 |
| 03 | -0.958 | 0.455 | 0.5 | -0.938 |
| 04 | -1.389 | -2.394 | -2.034 | 1.261 |
| 05 | -3.573 | -2.961 | 1.332 | -2.034 |
| 06 | -0.613 | -3.573 | 1.101 | -0.86 |
| 07 | -2.961 | -2.163 | 1.336 | -3.573 |
| 08 | 1.227 | -2.819 | -0.705 | -3.325 |
| 09 | 1.276 | -3.573 | -1.328 | -2.096 |
| 10 | 0.683 | -0.24 | -0.23 | -0.823 |
| 11 | 0.5 | -0.172 | -0.074 | -0.543 |