We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTAF1
(GeneCards)
ModelTAF1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusvRRvATGGMKRMvvnvvv
Best auROC (human)0.862
Best auROC (mouse)0.901
Peak sets in benchmark (human)61
Peak sets in benchmark (mouse)2
Aligned words500
TF familyTCF-7-related factors {4.1.3}
TF subfamilyTAF-1 (TAF-2A, TAF(II)250) [1] {4.1.3.0.5}
HGNCHGNC:11535
EntrezGeneGeneID:6872
(SSTAR profile)
UniProt IDTAF1_HUMAN
UniProt ACP21675
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.68761
0.0005 9.30386
0.0001 12.654510000000002
GTEx tissue expression atlas TAF1 expression
ReMap ChIP-seq dataset list TAF1 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0153.01.039.04.0138.02.026.06.086.00.071.08.040.04.015.07.0
02216.024.050.027.00.01.03.03.083.031.010.027.010.05.09.01.0
0384.040.0173.012.019.021.018.03.011.021.038.02.010.019.028.01.0
04100.04.019.01.096.03.00.02.0205.015.034.03.012.04.02.00.0
0531.08.027.0347.00.04.03.019.06.00.06.043.01.00.02.03.0
060.03.034.01.00.02.09.01.00.03.034.01.03.04.0394.011.0
071.00.01.01.01.00.011.00.031.05.0421.014.03.00.010.01.0
089.021.04.02.00.04.00.01.050.0356.06.031.01.013.01.01.0
097.02.046.05.019.019.0291.065.01.01.04.05.05.03.023.04.0
107.02.022.01.07.01.014.03.047.038.0250.029.09.05.061.04.0
1116.035.010.09.02.030.04.010.076.0217.025.029.01.028.01.07.0
1215.020.047.013.071.070.0121.048.017.03.014.06.08.03.035.09.0
1318.07.080.06.015.029.034.018.030.058.0109.020.011.023.033.09.0
1414.021.021.018.019.042.034.022.065.0104.053.034.012.027.08.06.0
1520.014.058.018.037.051.084.022.021.035.039.021.010.016.041.013.0
1619.09.056.04.044.010.043.019.041.040.0110.031.015.010.035.014.0
1713.041.053.012.013.017.020.019.049.086.081.028.01.020.032.015.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.523-3.1260.219-1.9751.476-2.584-0.181-1.61.004-4.40.814-1.3280.244-1.975-0.721-1.454
021.923-0.260.465-0.144-4.4-3.126-2.234-2.2340.969-0.008-1.114-0.144-1.114-1.77-1.215-3.126
030.9810.2441.701-0.938-0.49-0.392-0.543-2.234-1.022-0.3920.193-2.584-1.114-0.49-0.108-3.126
041.155-1.975-0.49-3.1261.114-2.234-4.4-2.5841.871-0.7210.083-2.234-0.938-1.975-2.584-4.4
05-0.008-1.328-0.1442.396-4.4-1.975-2.234-0.49-1.6-4.4-1.60.316-3.126-4.4-2.584-2.234
06-4.4-2.2340.083-3.126-4.4-2.584-1.215-3.126-4.4-2.2340.083-3.126-2.234-1.9752.523-1.022
07-3.126-4.4-3.126-3.126-3.126-4.4-1.022-4.4-0.008-1.772.589-0.788-2.234-4.4-1.114-3.126
08-1.215-0.392-1.975-2.584-4.4-1.975-4.4-3.1260.4652.422-1.6-0.008-3.126-0.86-3.126-3.126
09-1.454-2.5840.383-1.77-0.49-0.492.220.726-3.126-3.126-1.975-1.77-1.77-2.234-0.302-1.975
10-1.454-2.584-0.346-3.126-1.454-3.126-0.788-2.2340.4040.1932.069-0.074-1.215-1.770.663-1.975
11-0.6580.112-1.114-1.215-2.584-0.04-1.975-1.1140.8811.927-0.22-0.074-3.126-0.108-3.126-1.454
12-0.721-0.4390.404-0.860.8140.81.3450.425-0.599-2.234-0.788-1.6-1.328-2.2340.112-1.215
13-0.543-1.4540.932-1.6-0.721-0.0740.083-0.543-0.040.6131.241-0.439-1.022-0.3020.054-1.215
14-0.788-0.392-0.392-0.543-0.490.2930.083-0.3460.7261.1940.5230.083-0.938-0.144-1.328-1.6
15-0.439-0.7880.613-0.5430.1670.4850.981-0.346-0.3920.1120.219-0.392-1.114-0.6580.269-0.86
16-0.49-1.2150.578-1.9750.339-1.1140.316-0.490.2690.2441.25-0.008-0.721-1.1140.112-0.788
17-0.860.2690.523-0.938-0.86-0.599-0.439-0.490.4451.0040.945-0.108-3.126-0.4390.023-0.721