We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTAF1
(GeneCards)
ModelTAF1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusRRRRhGGMRGhRSvvv
Best auROC (human)0.894
Best auROC (mouse)0.91
Peak sets in benchmark (human)61
Peak sets in benchmark (mouse)2
Aligned words500
TF familyTCF-7-related factors {4.1.3}
TF subfamilyTAF-1 (TAF-2A, TAF(II)250) [1] {4.1.3.0.5}
HGNCHGNC:11535
EntrezGeneGeneID:6872
(SSTAR profile)
UniProt IDTAF1_HUMAN
UniProt ACP21675
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.187609999999999
0.0005 5.02576
0.0001 6.748010000000001
GTEx tissue expression atlas TAF1 expression
ReMap ChIP-seq dataset list TAF1 datasets
Motifs in JASPAR
PCM
ACGT
01253.029.0203.015.0
02376.023.078.023.0
03212.028.0256.04.0
04265.048.0180.07.0
05175.086.017.0222.0
0645.016.0419.020.0
079.07.0479.05.0
08162.0326.04.08.0
09116.028.0311.045.0
1035.032.0416.017.0
11141.0270.030.059.0
1290.032.0322.056.0
1379.083.0316.022.0
14151.0206.094.049.0
1595.073.0263.069.0
16136.069.0264.031.0
PWM
ACGT
010.699-1.4210.48-2.034
021.093-1.64-0.464-1.64
030.523-1.4540.711-3.126
040.745-0.9380.361-2.694
050.333-0.368-1.920.569
06-1.0-1.9751.201-1.77
07-2.484-2.6941.334-2.961
080.2560.951-3.126-2.584
09-0.074-1.4540.904-1.0
10-1.242-1.3281.194-1.92
110.1190.763-1.389-0.737
12-0.324-1.3280.939-0.788
13-0.452-0.4030.92-1.681
140.1870.495-0.281-0.918
15-0.271-0.5290.737-0.584
160.083-0.5840.741-1.358