Model info
| Transcription factor | TAF1 (GeneCards) | ||||||||
| Model | TAF1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRRRhGGMRGhRSvvv | ||||||||
| Best auROC (human) | 0.894 | ||||||||
| Best auROC (mouse) | 0.91 | ||||||||
| Peak sets in benchmark (human) | 61 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | TCF-7-related factors {4.1.3} | ||||||||
| TF subfamily | TAF-1 (TAF-2A, TAF(II)250) [1] {4.1.3.0.5} | ||||||||
| HGNC | HGNC:11535 | ||||||||
| EntrezGene | GeneID:6872 (SSTAR profile) | ||||||||
| UniProt ID | TAF1_HUMAN | ||||||||
| UniProt AC | P21675 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TAF1 expression | ||||||||
| ReMap ChIP-seq dataset list | TAF1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 253.0 | 29.0 | 203.0 | 15.0 |
| 02 | 376.0 | 23.0 | 78.0 | 23.0 |
| 03 | 212.0 | 28.0 | 256.0 | 4.0 |
| 04 | 265.0 | 48.0 | 180.0 | 7.0 |
| 05 | 175.0 | 86.0 | 17.0 | 222.0 |
| 06 | 45.0 | 16.0 | 419.0 | 20.0 |
| 07 | 9.0 | 7.0 | 479.0 | 5.0 |
| 08 | 162.0 | 326.0 | 4.0 | 8.0 |
| 09 | 116.0 | 28.0 | 311.0 | 45.0 |
| 10 | 35.0 | 32.0 | 416.0 | 17.0 |
| 11 | 141.0 | 270.0 | 30.0 | 59.0 |
| 12 | 90.0 | 32.0 | 322.0 | 56.0 |
| 13 | 79.0 | 83.0 | 316.0 | 22.0 |
| 14 | 151.0 | 206.0 | 94.0 | 49.0 |
| 15 | 95.0 | 73.0 | 263.0 | 69.0 |
| 16 | 136.0 | 69.0 | 264.0 | 31.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.699 | -1.421 | 0.48 | -2.034 |
| 02 | 1.093 | -1.64 | -0.464 | -1.64 |
| 03 | 0.523 | -1.454 | 0.711 | -3.126 |
| 04 | 0.745 | -0.938 | 0.361 | -2.694 |
| 05 | 0.333 | -0.368 | -1.92 | 0.569 |
| 06 | -1.0 | -1.975 | 1.201 | -1.77 |
| 07 | -2.484 | -2.694 | 1.334 | -2.961 |
| 08 | 0.256 | 0.951 | -3.126 | -2.584 |
| 09 | -0.074 | -1.454 | 0.904 | -1.0 |
| 10 | -1.242 | -1.328 | 1.194 | -1.92 |
| 11 | 0.119 | 0.763 | -1.389 | -0.737 |
| 12 | -0.324 | -1.328 | 0.939 | -0.788 |
| 13 | -0.452 | -0.403 | 0.92 | -1.681 |
| 14 | 0.187 | 0.495 | -0.281 | -0.918 |
| 15 | -0.271 | -0.529 | 0.737 | -0.584 |
| 16 | 0.083 | -0.584 | 0.741 | -1.358 |