Transcription factor | Taf1 | ||||||||
Model | TAF1_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 18 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | vRvvRWGGMRGMvvvvvn | ||||||||
Best auROC (human) | 0.846 | ||||||||
Best auROC (mouse) | 0.919 | ||||||||
Peak sets in benchmark (human) | 61 | ||||||||
Peak sets in benchmark (mouse) | 2 | ||||||||
Aligned words | 500 | ||||||||
TF family | TCF-7-related factors {4.1.3} | ||||||||
TF subfamily | TAF-1 (TAF-2A, TAF(II)250) [1] {4.1.3.0.5} | ||||||||
MGI | MGI:1336878 | ||||||||
EntrezGene | GeneID:270627 (SSTAR profile) | ||||||||
UniProt ID | TAF1_MOUSE | ||||||||
UniProt AC | Q80UV9 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Taf1 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 51.0 | 4.0 | 37.0 | 11.0 | 127.0 | 10.0 | 19.0 | 6.0 | 74.0 | 5.0 | 80.0 | 14.0 | 27.0 | 7.0 | 21.0 | 7.0 |
02 | 185.0 | 32.0 | 46.0 | 16.0 | 14.0 | 8.0 | 1.0 | 3.0 | 66.0 | 47.0 | 23.0 | 21.0 | 17.0 | 10.0 | 6.0 | 5.0 |
03 | 102.0 | 30.0 | 135.0 | 15.0 | 53.0 | 7.0 | 17.0 | 20.0 | 38.0 | 13.0 | 23.0 | 2.0 | 19.0 | 9.0 | 14.0 | 3.0 |
04 | 119.0 | 6.0 | 81.0 | 6.0 | 30.0 | 5.0 | 20.0 | 4.0 | 126.0 | 4.0 | 51.0 | 8.0 | 17.0 | 5.0 | 17.0 | 1.0 |
05 | 66.0 | 15.0 | 6.0 | 205.0 | 6.0 | 2.0 | 0.0 | 12.0 | 62.0 | 46.0 | 6.0 | 55.0 | 8.0 | 4.0 | 0.0 | 7.0 |
06 | 2.0 | 1.0 | 139.0 | 0.0 | 1.0 | 0.0 | 63.0 | 3.0 | 0.0 | 0.0 | 12.0 | 0.0 | 2.0 | 1.0 | 275.0 | 1.0 |
07 | 0.0 | 1.0 | 4.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 21.0 | 3.0 | 463.0 | 2.0 | 1.0 | 0.0 | 3.0 | 0.0 |
08 | 4.0 | 18.0 | 0.0 | 0.0 | 1.0 | 2.0 | 0.0 | 1.0 | 81.0 | 361.0 | 8.0 | 22.0 | 0.0 | 1.0 | 0.0 | 1.0 |
09 | 25.0 | 6.0 | 54.0 | 1.0 | 48.0 | 37.0 | 250.0 | 47.0 | 7.0 | 1.0 | 0.0 | 0.0 | 0.0 | 4.0 | 15.0 | 5.0 |
10 | 7.0 | 7.0 | 66.0 | 0.0 | 3.0 | 2.0 | 41.0 | 2.0 | 23.0 | 38.0 | 253.0 | 5.0 | 2.0 | 10.0 | 40.0 | 1.0 |
11 | 16.0 | 15.0 | 3.0 | 1.0 | 9.0 | 33.0 | 4.0 | 11.0 | 80.0 | 242.0 | 62.0 | 16.0 | 0.0 | 4.0 | 1.0 | 3.0 |
12 | 28.0 | 14.0 | 59.0 | 4.0 | 60.0 | 49.0 | 145.0 | 40.0 | 34.0 | 8.0 | 21.0 | 7.0 | 4.0 | 3.0 | 15.0 | 9.0 |
13 | 38.0 | 8.0 | 76.0 | 4.0 | 12.0 | 7.0 | 44.0 | 11.0 | 45.0 | 63.0 | 119.0 | 13.0 | 3.0 | 20.0 | 31.0 | 6.0 |
14 | 18.0 | 32.0 | 39.0 | 9.0 | 8.0 | 56.0 | 6.0 | 28.0 | 49.0 | 154.0 | 40.0 | 27.0 | 6.0 | 15.0 | 4.0 | 9.0 |
15 | 10.0 | 16.0 | 48.0 | 7.0 | 40.0 | 62.0 | 122.0 | 33.0 | 24.0 | 27.0 | 33.0 | 5.0 | 10.0 | 15.0 | 39.0 | 9.0 |
16 | 23.0 | 12.0 | 41.0 | 8.0 | 43.0 | 9.0 | 59.0 | 9.0 | 47.0 | 43.0 | 125.0 | 27.0 | 14.0 | 6.0 | 23.0 | 11.0 |
17 | 25.0 | 30.0 | 65.0 | 7.0 | 14.0 | 18.0 | 20.0 | 18.0 | 58.0 | 87.0 | 59.0 | 44.0 | 8.0 | 19.0 | 15.0 | 13.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.485 | -1.975 | 0.167 | -1.022 | 1.393 | -1.114 | -0.49 | -1.6 | 0.855 | -1.77 | 0.932 | -0.788 | -0.144 | -1.454 | -0.392 | -1.454 |
02 | 1.768 | 0.023 | 0.383 | -0.658 | -0.788 | -1.328 | -3.126 | -2.234 | 0.741 | 0.404 | -0.302 | -0.392 | -0.599 | -1.114 | -1.6 | -1.77 |
03 | 1.174 | -0.04 | 1.454 | -0.721 | 0.523 | -1.454 | -0.599 | -0.439 | 0.193 | -0.86 | -0.302 | -2.584 | -0.49 | -1.215 | -0.788 | -2.234 |
04 | 1.328 | -1.6 | 0.945 | -1.6 | -0.04 | -1.77 | -0.439 | -1.975 | 1.385 | -1.975 | 0.485 | -1.328 | -0.599 | -1.77 | -0.599 | -3.126 |
05 | 0.741 | -0.721 | -1.6 | 1.871 | -1.6 | -2.584 | -4.4 | -0.938 | 0.679 | 0.383 | -1.6 | 0.56 | -1.328 | -1.975 | -4.4 | -1.454 |
06 | -2.584 | -3.126 | 1.483 | -4.4 | -3.126 | -4.4 | 0.695 | -2.234 | -4.4 | -4.4 | -0.938 | -4.4 | -2.584 | -3.126 | 2.164 | -3.126 |
07 | -4.4 | -3.126 | -1.975 | -4.4 | -4.4 | -4.4 | -2.584 | -4.4 | -0.392 | -2.234 | 2.684 | -2.584 | -3.126 | -4.4 | -2.234 | -4.4 |
08 | -1.975 | -0.543 | -4.4 | -4.4 | -3.126 | -2.584 | -4.4 | -3.126 | 0.945 | 2.436 | -1.328 | -0.346 | -4.4 | -3.126 | -4.4 | -3.126 |
09 | -0.22 | -1.6 | 0.542 | -3.126 | 0.425 | 0.167 | 2.069 | 0.404 | -1.454 | -3.126 | -4.4 | -4.4 | -4.4 | -1.975 | -0.721 | -1.77 |
10 | -1.454 | -1.454 | 0.741 | -4.4 | -2.234 | -2.584 | 0.269 | -2.584 | -0.302 | 0.193 | 2.081 | -1.77 | -2.584 | -1.114 | 0.244 | -3.126 |
11 | -0.658 | -0.721 | -2.234 | -3.126 | -1.215 | 0.054 | -1.975 | -1.022 | 0.932 | 2.036 | 0.679 | -0.658 | -4.4 | -1.975 | -3.126 | -2.234 |
12 | -0.108 | -0.788 | 0.63 | -1.975 | 0.646 | 0.445 | 1.525 | 0.244 | 0.083 | -1.328 | -0.392 | -1.454 | -1.975 | -2.234 | -0.721 | -1.215 |
13 | 0.193 | -1.328 | 0.881 | -1.975 | -0.938 | -1.454 | 0.339 | -1.022 | 0.361 | 0.695 | 1.328 | -0.86 | -2.234 | -0.439 | -0.008 | -1.6 |
14 | -0.543 | 0.023 | 0.219 | -1.215 | -1.328 | 0.578 | -1.6 | -0.108 | 0.445 | 1.585 | 0.244 | -0.144 | -1.6 | -0.721 | -1.975 | -1.215 |
15 | -1.114 | -0.658 | 0.425 | -1.454 | 0.244 | 0.679 | 1.353 | 0.054 | -0.26 | -0.144 | 0.054 | -1.77 | -1.114 | -0.721 | 0.219 | -1.215 |
16 | -0.302 | -0.938 | 0.269 | -1.328 | 0.316 | -1.215 | 0.63 | -1.215 | 0.404 | 0.316 | 1.377 | -0.144 | -0.788 | -1.6 | -0.302 | -1.022 |
17 | -0.22 | -0.04 | 0.726 | -1.454 | -0.788 | -0.543 | -0.439 | -0.543 | 0.613 | 1.016 | 0.63 | 0.339 | -1.328 | -0.49 | -0.721 | -0.86 |