We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTaf1
ModelTAF1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusvRvvRWGGMRGMvvvvvn
Best auROC (human)0.846
Best auROC (mouse)0.919
Peak sets in benchmark (human)61
Peak sets in benchmark (mouse)2
Aligned words500
TF familyTCF-7-related factors {4.1.3}
TF subfamilyTAF-1 (TAF-2A, TAF(II)250) [1] {4.1.3.0.5}
MGIMGI:1336878
EntrezGeneGeneID:270627
(SSTAR profile)
UniProt IDTAF1_MOUSE
UniProt ACQ80UV9
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.567310000000001
0.0005 9.18291
0.0001 12.44766
GTEx tissue expression atlas Taf1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0151.04.037.011.0127.010.019.06.074.05.080.014.027.07.021.07.0
02185.032.046.016.014.08.01.03.066.047.023.021.017.010.06.05.0
03102.030.0135.015.053.07.017.020.038.013.023.02.019.09.014.03.0
04119.06.081.06.030.05.020.04.0126.04.051.08.017.05.017.01.0
0566.015.06.0205.06.02.00.012.062.046.06.055.08.04.00.07.0
062.01.0139.00.01.00.063.03.00.00.012.00.02.01.0275.01.0
070.01.04.00.00.00.02.00.021.03.0463.02.01.00.03.00.0
084.018.00.00.01.02.00.01.081.0361.08.022.00.01.00.01.0
0925.06.054.01.048.037.0250.047.07.01.00.00.00.04.015.05.0
107.07.066.00.03.02.041.02.023.038.0253.05.02.010.040.01.0
1116.015.03.01.09.033.04.011.080.0242.062.016.00.04.01.03.0
1228.014.059.04.060.049.0145.040.034.08.021.07.04.03.015.09.0
1338.08.076.04.012.07.044.011.045.063.0119.013.03.020.031.06.0
1418.032.039.09.08.056.06.028.049.0154.040.027.06.015.04.09.0
1510.016.048.07.040.062.0122.033.024.027.033.05.010.015.039.09.0
1623.012.041.08.043.09.059.09.047.043.0125.027.014.06.023.011.0
1725.030.065.07.014.018.020.018.058.087.059.044.08.019.015.013.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.485-1.9750.167-1.0221.393-1.114-0.49-1.60.855-1.770.932-0.788-0.144-1.454-0.392-1.454
021.7680.0230.383-0.658-0.788-1.328-3.126-2.2340.7410.404-0.302-0.392-0.599-1.114-1.6-1.77
031.174-0.041.454-0.7210.523-1.454-0.599-0.4390.193-0.86-0.302-2.584-0.49-1.215-0.788-2.234
041.328-1.60.945-1.6-0.04-1.77-0.439-1.9751.385-1.9750.485-1.328-0.599-1.77-0.599-3.126
050.741-0.721-1.61.871-1.6-2.584-4.4-0.9380.6790.383-1.60.56-1.328-1.975-4.4-1.454
06-2.584-3.1261.483-4.4-3.126-4.40.695-2.234-4.4-4.4-0.938-4.4-2.584-3.1262.164-3.126
07-4.4-3.126-1.975-4.4-4.4-4.4-2.584-4.4-0.392-2.2342.684-2.584-3.126-4.4-2.234-4.4
08-1.975-0.543-4.4-4.4-3.126-2.584-4.4-3.1260.9452.436-1.328-0.346-4.4-3.126-4.4-3.126
09-0.22-1.60.542-3.1260.4250.1672.0690.404-1.454-3.126-4.4-4.4-4.4-1.975-0.721-1.77
10-1.454-1.4540.741-4.4-2.234-2.5840.269-2.584-0.3020.1932.081-1.77-2.584-1.1140.244-3.126
11-0.658-0.721-2.234-3.126-1.2150.054-1.975-1.0220.9322.0360.679-0.658-4.4-1.975-3.126-2.234
12-0.108-0.7880.63-1.9750.6460.4451.5250.2440.083-1.328-0.392-1.454-1.975-2.234-0.721-1.215
130.193-1.3280.881-1.975-0.938-1.4540.339-1.0220.3610.6951.328-0.86-2.234-0.439-0.008-1.6
14-0.5430.0230.219-1.215-1.3280.578-1.6-0.1080.4451.5850.244-0.144-1.6-0.721-1.975-1.215
15-1.114-0.6580.425-1.4540.2440.6791.3530.054-0.26-0.1440.054-1.77-1.114-0.7210.219-1.215
16-0.302-0.9380.269-1.3280.316-1.2150.63-1.2150.4040.3161.377-0.144-0.788-1.6-0.302-1.022
17-0.22-0.040.726-1.454-0.788-0.543-0.439-0.5430.6131.0160.630.339-1.328-0.49-0.721-0.86