Model info
| Transcription factor | TAL1 (GeneCards) | ||||||||
| Model | TAL1_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vvdvhRRCAGvTGbb | ||||||||
| Best auROC (human) | 0.828 | ||||||||
| Best auROC (mouse) | 0.73 | ||||||||
| Peak sets in benchmark (human) | 68 | ||||||||
| Peak sets in benchmark (mouse) | 76 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Tal / HEN-like factors {1.2.3.1} | ||||||||
| HGNC | HGNC:11556 | ||||||||
| EntrezGene | GeneID:6886 (SSTAR profile) | ||||||||
| UniProt ID | TAL1_HUMAN | ||||||||
| UniProt AC | P17542 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TAL1 expression | ||||||||
| ReMap ChIP-seq dataset list | TAL1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 107.0 | 192.0 | 130.0 | 71.0 |
| 02 | 240.0 | 103.0 | 79.0 | 78.0 |
| 03 | 138.0 | 20.0 | 243.0 | 99.0 |
| 04 | 87.0 | 127.0 | 252.0 | 34.0 |
| 05 | 279.0 | 107.0 | 48.0 | 66.0 |
| 06 | 305.0 | 12.0 | 108.0 | 75.0 |
| 07 | 199.0 | 56.0 | 241.0 | 4.0 |
| 08 | 17.0 | 473.0 | 7.0 | 3.0 |
| 09 | 466.0 | 1.0 | 3.0 | 30.0 |
| 10 | 6.0 | 35.0 | 431.0 | 28.0 |
| 11 | 196.0 | 174.0 | 108.0 | 22.0 |
| 12 | 35.0 | 5.0 | 12.0 | 448.0 |
| 13 | 19.0 | 7.0 | 440.0 | 34.0 |
| 14 | 45.0 | 62.0 | 173.0 | 220.0 |
| 15 | 58.0 | 121.0 | 165.0 | 156.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.153 | 0.425 | 0.039 | -0.556 |
| 02 | 0.646 | -0.191 | -0.452 | -0.464 |
| 03 | 0.098 | -1.77 | 0.659 | -0.23 |
| 04 | -0.357 | 0.016 | 0.695 | -1.27 |
| 05 | 0.796 | -0.153 | -0.938 | -0.628 |
| 06 | 0.885 | -2.234 | -0.144 | -0.503 |
| 07 | 0.46 | -0.788 | 0.651 | -3.126 |
| 08 | -1.92 | 1.322 | -2.694 | -3.325 |
| 09 | 1.307 | -3.903 | -3.325 | -1.389 |
| 10 | -2.819 | -1.242 | 1.229 | -1.454 |
| 11 | 0.445 | 0.327 | -0.144 | -1.681 |
| 12 | -1.242 | -2.961 | -2.234 | 1.268 |
| 13 | -1.818 | -2.694 | 1.25 | -1.27 |
| 14 | -1.0 | -0.689 | 0.322 | 0.56 |
| 15 | -0.754 | -0.032 | 0.275 | 0.219 |