We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTAL1
(GeneCards)
ModelTAL1_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
1
ConsensusvvdvhRRCAGvTGbb
Best auROC (human)0.828
Best auROC (mouse)0.73
Peak sets in benchmark (human)68
Peak sets in benchmark (mouse)76
Aligned words500
TF familyTal-related factors {1.2.3}
TF subfamilyTal / HEN-like factors {1.2.3.1}
HGNCHGNC:11556
EntrezGeneGeneID:6886
(SSTAR profile)
UniProt IDTAL1_HUMAN
UniProt ACP17542
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.16136
0.0005 5.9871099999999995
0.0001 7.66756
GTEx tissue expression atlas TAL1 expression
ReMap ChIP-seq dataset list TAL1 datasets
Motifs in JASPAR
PCM
ACGT
01107.0192.0130.071.0
02240.0103.079.078.0
03138.020.0243.099.0
0487.0127.0252.034.0
05279.0107.048.066.0
06305.012.0108.075.0
07199.056.0241.04.0
0817.0473.07.03.0
09466.01.03.030.0
106.035.0431.028.0
11196.0174.0108.022.0
1235.05.012.0448.0
1319.07.0440.034.0
1445.062.0173.0220.0
1558.0121.0165.0156.0
PWM
ACGT
01-0.1530.4250.039-0.556
020.646-0.191-0.452-0.464
030.098-1.770.659-0.23
04-0.3570.0160.695-1.27
050.796-0.153-0.938-0.628
060.885-2.234-0.144-0.503
070.46-0.7880.651-3.126
08-1.921.322-2.694-3.325
091.307-3.903-3.325-1.389
10-2.819-1.2421.229-1.454
110.4450.327-0.144-1.681
12-1.242-2.961-2.2341.268
13-1.818-2.6941.25-1.27
14-1.0-0.6890.3220.56
15-0.754-0.0320.2750.219