We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTBP
(GeneCards)
ModelTBP_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusvWWKAAAWRvvvn
Best auROC (human)0.938
Best auROC (mouse)0.882
Peak sets in benchmark (human)21
Peak sets in benchmark (mouse)45
Aligned words502
TF familyTBP-related factors {8.1.1}
TF subfamilyTBP {8.1.1.0.1}
HGNCHGNC:11588
EntrezGeneGeneID:6908
(SSTAR profile)
UniProt IDTBP_HUMAN
UniProt ACP20226
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.60361
0.0005 12.870360000000002
0.0001 15.249179999999999
GTEx tissue expression atlas TBP expression
ReMap ChIP-seq dataset list TBP datasets
Motifs in JASPAR
MA0108.1 (TBP; )
MA0108.2 (TBP; )
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0127.07.015.036.012.029.03.0169.031.012.018.065.02.012.08.054.0
0256.01.09.06.034.02.02.022.033.01.03.07.0239.08.013.064.0
0312.019.085.0246.00.03.05.04.00.00.018.09.00.01.024.074.0
0411.00.01.00.021.00.01.01.0123.03.05.01.0325.01.04.03.0
05421.03.04.052.04.00.00.00.07.01.00.03.04.00.01.00.0
06378.012.041.05.03.00.00.01.03.00.02.00.053.00.01.01.0
07233.011.080.0113.07.00.01.04.024.01.07.012.04.00.03.00.0
0898.016.0145.09.04.02.06.00.023.013.048.07.087.03.028.011.0
0943.055.085.029.07.012.05.010.029.053.0114.031.04.011.011.01.0
1033.026.018.06.049.035.032.015.060.078.065.012.08.024.034.05.0
1178.019.042.011.064.030.056.013.053.035.052.09.011.012.014.01.0
1262.042.073.029.013.023.043.017.042.051.050.021.05.09.012.08.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.144-1.454-0.7210.14-0.938-0.074-2.2341.678-0.008-0.938-0.5430.726-2.584-0.938-1.3280.542
020.578-3.126-1.215-1.60.083-2.584-2.584-0.3460.054-3.126-2.234-1.4542.024-1.328-0.860.711
03-0.938-0.490.9932.053-4.4-2.234-1.77-1.975-4.4-4.4-0.543-1.215-4.4-3.126-0.260.855
04-1.022-4.4-3.126-4.4-0.392-4.4-3.126-3.1261.361-2.234-1.77-3.1262.331-3.126-1.975-2.234
052.589-2.234-1.9750.504-1.975-4.4-4.4-4.4-1.454-3.126-4.4-2.234-1.975-4.4-3.126-4.4
062.482-0.9380.269-1.77-2.234-4.4-4.4-3.126-2.234-4.4-2.584-4.40.523-4.4-3.126-3.126
071.998-1.0220.9321.276-1.454-4.4-3.126-1.975-0.26-3.126-1.454-0.938-1.975-4.4-2.234-4.4
081.135-0.6581.525-1.215-1.975-2.584-1.6-4.4-0.302-0.860.425-1.4541.016-2.234-0.108-1.022
090.3160.560.993-0.074-1.454-0.938-1.77-1.114-0.0740.5231.285-0.008-1.975-1.022-1.022-3.126
100.054-0.181-0.543-1.60.4450.1120.023-0.7210.6460.9070.726-0.938-1.328-0.260.083-1.77
110.907-0.490.293-1.0220.711-0.040.578-0.860.5230.1120.504-1.215-1.022-0.938-0.788-3.126
120.6790.2930.841-0.074-0.86-0.3020.316-0.5990.2930.4850.465-0.392-1.77-1.215-0.938-1.328