Model info
| Transcription factor | TBP (GeneCards) | ||||||||
| Model | TBP_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | MbATAWAWRS | ||||||||
| Best auROC (human) | 0.868 | ||||||||
| Best auROC (mouse) | 0.798 | ||||||||
| Peak sets in benchmark (human) | 21 | ||||||||
| Peak sets in benchmark (mouse) | 45 | ||||||||
| Aligned words | 149 | ||||||||
| TF family | TBP-related factors {8.1.1} | ||||||||
| TF subfamily | TBP {8.1.1.0.1} | ||||||||
| HGNC | HGNC:11588 | ||||||||
| EntrezGene | GeneID:6908 (SSTAR profile) | ||||||||
| UniProt ID | TBP_HUMAN | ||||||||
| UniProt AC | P20226 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TBP expression | ||||||||
| ReMap ChIP-seq dataset list | TBP datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 42.0 | 81.0 | 23.0 | 3.0 |
| 02 | 7.0 | 13.0 | 13.0 | 116.0 |
| 03 | 121.0 | 0.0 | 7.0 | 21.0 |
| 04 | 7.0 | 7.0 | 6.0 | 129.0 |
| 05 | 128.0 | 9.0 | 6.0 | 6.0 |
| 06 | 106.0 | 5.0 | 4.0 | 34.0 |
| 07 | 115.0 | 3.0 | 29.0 | 2.0 |
| 08 | 89.0 | 1.0 | 23.0 | 36.0 |
| 09 | 59.0 | 5.0 | 74.0 | 11.0 |
| 10 | 11.0 | 46.0 | 85.0 | 7.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.116 | 0.759 | -0.462 | -2.204 |
| 02 | -1.54 | -0.994 | -0.994 | 1.114 |
| 03 | 1.155 | -3.427 | -1.54 | -0.548 |
| 04 | -1.54 | -1.54 | -1.67 | 1.219 |
| 05 | 1.211 | -1.323 | -1.67 | -1.67 |
| 06 | 1.024 | -1.818 | -1.992 | -0.088 |
| 07 | 1.105 | -2.204 | -0.241 | -2.472 |
| 08 | 0.852 | -2.839 | -0.462 | -0.033 |
| 09 | 0.448 | -1.818 | 0.67 | -1.145 |
| 10 | -1.145 | 0.205 | 0.807 | -1.54 |