We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTbp
ModelTBP_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusvWATAAAWRv
Best auROC (human)0.788
Best auROC (mouse)0.851
Peak sets in benchmark (human)21
Peak sets in benchmark (mouse)45
Aligned words500
TF familyTBP-related factors {8.1.1}
TF subfamilyTBP {8.1.1.0.1}
MGIMGI:101838
EntrezGeneGeneID:21374
(SSTAR profile)
UniProt IDTBP_MOUSE
UniProt ACP29037
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.618825
0.0005 6.34848
0.0001 7.833975000000001
GTEx tissue expression atlas Tbp expression
Motifs in JASPAR
MA0108.1 (TBP; )
MA0108.2 (TBP; )
PCM
ACGT
0182.0252.0137.029.0
0267.057.024.0352.0
03384.08.012.096.0
0418.022.051.0409.0
05457.015.018.010.0
06426.09.05.060.0
07473.00.025.02.0
08381.03.036.080.0
09204.09.0269.018.0
1057.0185.0215.043.0
PWM
ACGT
01-0.4150.6950.091-1.421
02-0.613-0.771-1.61.027
031.114-2.584-2.234-0.26
04-1.868-1.681-0.8791.177
051.287-2.034-1.868-2.394
061.217-2.484-2.961-0.721
071.322-4.4-1.561-3.573
081.106-3.325-1.215-0.439
090.485-2.4840.76-1.868
10-0.7710.3880.537-1.044