Model info
| Transcription factor | Tbp | ||||||||
| Model | TBP_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vWATAAAWRv | ||||||||
| Best auROC (human) | 0.788 | ||||||||
| Best auROC (mouse) | 0.851 | ||||||||
| Peak sets in benchmark (human) | 21 | ||||||||
| Peak sets in benchmark (mouse) | 45 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | TBP-related factors {8.1.1} | ||||||||
| TF subfamily | TBP {8.1.1.0.1} | ||||||||
| MGI | MGI:101838 | ||||||||
| EntrezGene | GeneID:21374 (SSTAR profile) | ||||||||
| UniProt ID | TBP_MOUSE | ||||||||
| UniProt AC | P29037 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tbp expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 82.0 | 252.0 | 137.0 | 29.0 |
| 02 | 67.0 | 57.0 | 24.0 | 352.0 |
| 03 | 384.0 | 8.0 | 12.0 | 96.0 |
| 04 | 18.0 | 22.0 | 51.0 | 409.0 |
| 05 | 457.0 | 15.0 | 18.0 | 10.0 |
| 06 | 426.0 | 9.0 | 5.0 | 60.0 |
| 07 | 473.0 | 0.0 | 25.0 | 2.0 |
| 08 | 381.0 | 3.0 | 36.0 | 80.0 |
| 09 | 204.0 | 9.0 | 269.0 | 18.0 |
| 10 | 57.0 | 185.0 | 215.0 | 43.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.415 | 0.695 | 0.091 | -1.421 |
| 02 | -0.613 | -0.771 | -1.6 | 1.027 |
| 03 | 1.114 | -2.584 | -2.234 | -0.26 |
| 04 | -1.868 | -1.681 | -0.879 | 1.177 |
| 05 | 1.287 | -2.034 | -1.868 | -2.394 |
| 06 | 1.217 | -2.484 | -2.961 | -0.721 |
| 07 | 1.322 | -4.4 | -1.561 | -3.573 |
| 08 | 1.106 | -3.325 | -1.215 | -0.439 |
| 09 | 0.485 | -2.484 | 0.76 | -1.868 |
| 10 | -0.771 | 0.388 | 0.537 | -1.044 |