We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTBR1
(GeneCards)
ModelTBR1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length13
Quality
D
Motif rank
0
ConsensusvdAGGTGTGAWhd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words16871
TF familyTBrain-related factors {6.5.2}
TF subfamilyTBR-1 {6.5.2.0.1}
HGNCHGNC:11590
EntrezGeneGeneID:10716
(SSTAR profile)
UniProt IDTBR1_HUMAN
UniProt ACQ16650
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.65006
0.0005 4.86986
0.0001 7.387090000000001
GTEx tissue expression atlas TBR1 expression
ReMap ChIP-seq dataset list TBR1 datasets
Motifs in JASPAR
PCM
ACGT
016642.3492937.1443597.3282533.199
028017.4911144.9083957.4172590.204
0314366.07595.1041007.852240.99
041521.833476.62612855.884855.677
052.68953.76315604.51149.057
06106.177256.788241.9215105.135
07328.94262.16215301.10617.811
08327.715833.906517.10314031.296
09326.944345.86613860.4381176.772
1015166.49194.926217.262231.341
1112320.081932.861651.1341805.944
129250.6952364.6281641.3862453.311
136919.9641925.5512050.5374813.969
PWM
ACGT
010.525-0.29-0.088-0.438
020.713-1.2310.008-0.416
031.296-3.696-1.358-2.782
04-0.947-2.1051.185-1.522
05-6.646-4.2481.379-4.335
06-3.589-2.719-2.7781.347
07-2.473-4.1091.359-5.269
08-2.477-1.547-2.0231.273
09-2.479-2.4231.261-1.204
101.351-3.698-2.884-2.822
111.143-1.436-1.794-0.776
120.856-0.507-0.872-0.47
130.566-0.712-0.6490.203