Model info
| Transcription factor | TBR1 (GeneCards) | ||||||||
| Model | TBR1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdAGGTGTGAWhd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 16871 | ||||||||
| TF family | TBrain-related factors {6.5.2} | ||||||||
| TF subfamily | TBR-1 {6.5.2.0.1} | ||||||||
| HGNC | HGNC:11590 | ||||||||
| EntrezGene | GeneID:10716 (SSTAR profile) | ||||||||
| UniProt ID | TBR1_HUMAN | ||||||||
| UniProt AC | Q16650 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TBR1 expression | ||||||||
| ReMap ChIP-seq dataset list | TBR1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6642.349 | 2937.144 | 3597.328 | 2533.199 |
| 02 | 8017.491 | 1144.908 | 3957.417 | 2590.204 |
| 03 | 14366.075 | 95.104 | 1007.852 | 240.99 |
| 04 | 1521.833 | 476.626 | 12855.884 | 855.677 |
| 05 | 2.689 | 53.763 | 15604.511 | 49.057 |
| 06 | 106.177 | 256.788 | 241.92 | 15105.135 |
| 07 | 328.942 | 62.162 | 15301.106 | 17.811 |
| 08 | 327.715 | 833.906 | 517.103 | 14031.296 |
| 09 | 326.944 | 345.866 | 13860.438 | 1176.772 |
| 10 | 15166.491 | 94.926 | 217.262 | 231.341 |
| 11 | 12320.081 | 932.861 | 651.134 | 1805.944 |
| 12 | 9250.695 | 2364.628 | 1641.386 | 2453.311 |
| 13 | 6919.964 | 1925.551 | 2050.537 | 4813.969 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.525 | -0.29 | -0.088 | -0.438 |
| 02 | 0.713 | -1.231 | 0.008 | -0.416 |
| 03 | 1.296 | -3.696 | -1.358 | -2.782 |
| 04 | -0.947 | -2.105 | 1.185 | -1.522 |
| 05 | -6.646 | -4.248 | 1.379 | -4.335 |
| 06 | -3.589 | -2.719 | -2.778 | 1.347 |
| 07 | -2.473 | -4.109 | 1.359 | -5.269 |
| 08 | -2.477 | -1.547 | -2.023 | 1.273 |
| 09 | -2.479 | -2.423 | 1.261 | -1.204 |
| 10 | 1.351 | -3.698 | -2.884 | -2.822 |
| 11 | 1.143 | -1.436 | -1.794 | -0.776 |
| 12 | 0.856 | -0.507 | -0.872 | -0.47 |
| 13 | 0.566 | -0.712 | -0.649 | 0.203 |