Model info
| Transcription factor | TBX20 (GeneCards) | ||||||||
| Model | TBX20_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddSTGnTGAMARvn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.883 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | TBX1-related factors {6.5.3} | ||||||||
| TF subfamily | TBX20 {6.5.3.0.5} | ||||||||
| HGNC | HGNC:11598 | ||||||||
| EntrezGene | GeneID:57057 (SSTAR profile) | ||||||||
| UniProt ID | TBX20_HUMAN | ||||||||
| UniProt AC | Q9UMR3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TBX20 expression | ||||||||
| ReMap ChIP-seq dataset list | TBX20 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 184.0 | 63.0 | 145.0 | 107.0 |
| 02 | 138.0 | 48.0 | 242.0 | 71.0 |
| 03 | 15.0 | 132.0 | 307.0 | 45.0 |
| 04 | 32.0 | 52.0 | 11.0 | 404.0 |
| 05 | 14.0 | 6.0 | 477.0 | 2.0 |
| 06 | 118.0 | 181.0 | 68.0 | 132.0 |
| 07 | 22.0 | 6.0 | 30.0 | 441.0 |
| 08 | 14.0 | 3.0 | 480.0 | 2.0 |
| 09 | 464.0 | 21.0 | 13.0 | 1.0 |
| 10 | 63.0 | 391.0 | 35.0 | 10.0 |
| 11 | 467.0 | 1.0 | 9.0 | 22.0 |
| 12 | 70.0 | 10.0 | 372.0 | 47.0 |
| 13 | 54.0 | 168.0 | 230.0 | 47.0 |
| 14 | 147.0 | 119.0 | 67.0 | 166.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.385 | -0.671 | 0.149 | -0.151 |
| 02 | 0.1 | -0.936 | 0.657 | -0.554 |
| 03 | -2.032 | 0.056 | 0.893 | -0.998 |
| 04 | -1.326 | -0.858 | -2.309 | 1.167 |
| 05 | -2.094 | -2.817 | 1.332 | -3.571 |
| 06 | -0.055 | 0.368 | -0.597 | 0.056 |
| 07 | -1.679 | -2.817 | -1.387 | 1.254 |
| 08 | -2.094 | -3.323 | 1.338 | -3.571 |
| 09 | 1.305 | -1.723 | -2.161 | -3.901 |
| 10 | -0.671 | 1.134 | -1.24 | -2.392 |
| 11 | 1.311 | -3.901 | -2.482 | -1.679 |
| 12 | -0.568 | -2.392 | 1.084 | -0.956 |
| 13 | -0.821 | 0.294 | 0.606 | -0.956 |
| 14 | 0.162 | -0.047 | -0.611 | 0.283 |