We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTBX20
(GeneCards)
ModelTBX20_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
D
Motif rank
0
ConsensusddSTGnTGAMARvn
Best auROC (human)
Best auROC (mouse)0.883
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words500
TF familyTBX1-related factors {6.5.3}
TF subfamilyTBX20 {6.5.3.0.5}
HGNCHGNC:11598
EntrezGeneGeneID:57057
(SSTAR profile)
UniProt IDTBX20_HUMAN
UniProt ACQ9UMR3
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.51026
0.0005 5.478009999999999
0.0001 7.46656
GTEx tissue expression atlas TBX20 expression
ReMap ChIP-seq dataset list TBX20 datasets
Motifs in JASPAR
MA0689.1 (TBX20; Homo sapiens)
PCM
ACGT
01184.063.0145.0107.0
02138.048.0242.071.0
0315.0132.0307.045.0
0432.052.011.0404.0
0514.06.0477.02.0
06118.0181.068.0132.0
0722.06.030.0441.0
0814.03.0480.02.0
09464.021.013.01.0
1063.0391.035.010.0
11467.01.09.022.0
1270.010.0372.047.0
1354.0168.0230.047.0
14147.0119.067.0166.0
PWM
ACGT
010.385-0.6710.149-0.151
020.1-0.9360.657-0.554
03-2.0320.0560.893-0.998
04-1.326-0.858-2.3091.167
05-2.094-2.8171.332-3.571
06-0.0550.368-0.5970.056
07-1.679-2.817-1.3871.254
08-2.094-3.3231.338-3.571
091.305-1.723-2.161-3.901
10-0.6711.134-1.24-2.392
111.311-3.901-2.482-1.679
12-0.568-2.3921.084-0.956
13-0.8210.2940.606-0.956
140.162-0.047-0.6110.283