We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTBX21
(GeneCards)
ModelTBX21_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusvdvddRSTGWKRn
Best auROC (human)0.829
Best auROC (mouse)0.831
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)17
Aligned words497
TF familyTBrain-related factors {6.5.2}
TF subfamilyTBX21 (T-bet) {6.5.2.0.3}
HGNCHGNC:11599
EntrezGeneGeneID:30009
(SSTAR profile)
UniProt IDTBX21_HUMAN
UniProt ACQ9UL17
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.1708099999999995
0.0005 5.78736
0.0001 7.01686
GTEx tissue expression atlas TBX21 expression
ReMap ChIP-seq dataset list TBX21 datasets
Motifs in JASPAR
MA0690.1 (TBX21; Homo sapiens)
PCM
ACGT
01106.0100.0217.071.0
02106.057.0156.0175.0
0363.092.0283.056.0
04163.054.0165.0112.0
05243.026.0159.066.0
0694.04.0346.050.0
0728.0147.0297.022.0
0824.04.04.0462.0
091.01.0478.014.0
1073.062.060.0299.0
1121.081.0303.089.0
12297.09.0157.031.0
13186.094.0128.086.0
PWM
ACGT
01-0.151-0.2080.558-0.544
02-0.151-0.7590.2310.345
03-0.661-0.290.822-0.776
040.274-0.8110.287-0.096
050.671-1.5130.25-0.616
06-0.269-3.1151.022-0.886
07-1.4430.1720.87-1.67
08-1.588-3.115-3.1151.31
09-3.892-3.8921.344-2.085
10-0.517-0.677-0.7090.877
11-1.713-0.4150.89-0.323
120.87-2.4730.237-1.346
130.405-0.2690.035-0.357