Model info
| Transcription factor | Tbx2 | ||||||||
| Model | TBX2_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 25 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hbMhWhChbAGGTGTGAnRWKnSMn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 9 | ||||||||
| TF family | TBX2-related factors {6.5.4} | ||||||||
| TF subfamily | TBX2 {6.5.4.0.1} | ||||||||
| MGI | MGI:98494 | ||||||||
| EntrezGene | GeneID:21385 (SSTAR profile) | ||||||||
| UniProt ID | TBX2_MOUSE | ||||||||
| UniProt AC | Q60707 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tbx2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.553 | 1.553 | 0.5 | 4.395 |
| 02 | 0.947 | 1.053 | 4.105 | 1.895 |
| 03 | 2.105 | 3.895 | 2.0 | 0.0 |
| 04 | 2.947 | 3.053 | 0.947 | 1.053 |
| 05 | 4.0 | 1.895 | 0.0 | 2.105 |
| 06 | 2.947 | 1.053 | 0.947 | 3.053 |
| 07 | 0.0 | 7.053 | 0.0 | 0.947 |
| 08 | 4.211 | 1.895 | 0.0 | 1.895 |
| 09 | 1.053 | 2.0 | 3.053 | 1.895 |
| 10 | 6.947 | 0.0 | 0.0 | 1.053 |
| 11 | 1.053 | 0.0 | 6.947 | 0.0 |
| 12 | 1.053 | 0.0 | 6.947 | 0.0 |
| 13 | 1.053 | 0.0 | 0.0 | 6.947 |
| 14 | 0.0 | 0.0 | 6.947 | 1.053 |
| 15 | 2.105 | 0.0 | 0.0 | 5.895 |
| 16 | 0.0 | 1.053 | 6.947 | 0.0 |
| 17 | 6.947 | 1.053 | 0.0 | 0.0 |
| 18 | 4.0 | 0.0 | 4.0 | 0.0 |
| 19 | 4.0 | 1.895 | 2.105 | 0.0 |
| 20 | 3.053 | 2.0 | 0.0 | 2.947 |
| 21 | 0.947 | 0.0 | 5.158 | 1.895 |
| 22 | 1.053 | 3.895 | 1.053 | 2.0 |
| 23 | 0.0 | 2.947 | 4.105 | 0.947 |
| 24 | 4.105 | 2.947 | 0.947 | 0.0 |
| 25 | 1.526 | 3.526 | 1.421 | 1.526 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.195 | -0.195 | -0.905 | 0.668 |
| 02 | -0.541 | -0.472 | 0.607 | -0.043 |
| 03 | 0.041 | 0.561 | 0.0 | -1.578 |
| 04 | 0.319 | 0.349 | -0.541 | -0.472 |
| 05 | 0.584 | -0.043 | -1.578 | 0.041 |
| 06 | 0.319 | -0.472 | -0.541 | 0.349 |
| 07 | -1.578 | 1.1 | -1.578 | -0.541 |
| 08 | 0.63 | -0.043 | -1.578 | -0.043 |
| 09 | -0.472 | 0.0 | 0.349 | -0.043 |
| 10 | 1.086 | -1.578 | -1.578 | -0.472 |
| 11 | -0.472 | -1.578 | 1.086 | -1.578 |
| 12 | -0.472 | -1.578 | 1.086 | -1.578 |
| 13 | -0.472 | -1.578 | -1.578 | 1.086 |
| 14 | -1.578 | -1.578 | 1.086 | -0.472 |
| 15 | 0.041 | -1.578 | -1.578 | 0.934 |
| 16 | -1.578 | -0.472 | 1.086 | -1.578 |
| 17 | 1.086 | -0.472 | -1.578 | -1.578 |
| 18 | 0.584 | -1.578 | 0.584 | -1.578 |
| 19 | 0.584 | -0.043 | 0.041 | -1.578 |
| 20 | 0.349 | 0.0 | -1.578 | 0.319 |
| 21 | -0.541 | -1.578 | 0.812 | -0.043 |
| 22 | -0.472 | 0.561 | -0.472 | 0.0 |
| 23 | -1.578 | 0.319 | 0.607 | -0.541 |
| 24 | 0.607 | 0.319 | -0.541 | -1.578 |
| 25 | -0.208 | 0.474 | -0.261 | -0.208 |