Model info
| Transcription factor | TBX3 (GeneCards) | ||||||||
| Model | TBX3_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvWGGTGbnRv | ||||||||
| Best auROC (human) | 0.963 | ||||||||
| Best auROC (mouse) | 0.583 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 420 | ||||||||
| TF family | TBX2-related factors {6.5.4} | ||||||||
| TF subfamily | TBX3 {6.5.4.0.2} | ||||||||
| HGNC | HGNC:11602 | ||||||||
| EntrezGene | GeneID:6926 (SSTAR profile) | ||||||||
| UniProt ID | TBX3_HUMAN | ||||||||
| UniProt AC | O15119 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TBX3 expression | ||||||||
| ReMap ChIP-seq dataset list | TBX3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 134.0 | 47.0 | 148.0 | 91.0 |
| 02 | 160.0 | 72.0 | 161.0 | 27.0 |
| 03 | 248.0 | 2.0 | 73.0 | 97.0 |
| 04 | 31.0 | 0.0 | 388.0 | 1.0 |
| 05 | 5.0 | 56.0 | 354.0 | 5.0 |
| 06 | 15.0 | 3.0 | 6.0 | 396.0 |
| 07 | 7.0 | 0.0 | 407.0 | 6.0 |
| 08 | 43.0 | 92.0 | 183.0 | 102.0 |
| 09 | 66.0 | 110.0 | 178.0 | 66.0 |
| 10 | 295.0 | 11.0 | 85.0 | 29.0 |
| 11 | 178.0 | 38.0 | 169.0 | 35.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.241 | -0.786 | 0.339 | -0.141 |
| 02 | 0.416 | -0.371 | 0.423 | -1.318 |
| 03 | 0.851 | -3.413 | -0.357 | -0.078 |
| 04 | -1.187 | -4.256 | 1.297 | -3.748 |
| 05 | -2.795 | -0.616 | 1.205 | -2.795 |
| 06 | -1.864 | -3.162 | -2.652 | 1.317 |
| 07 | -2.527 | -4.256 | 1.344 | -2.652 |
| 08 | -0.873 | -0.13 | 0.549 | -0.029 |
| 09 | -0.456 | 0.046 | 0.522 | -0.456 |
| 10 | 1.024 | -2.142 | -0.208 | -1.25 |
| 11 | 0.522 | -0.992 | 0.471 | -1.071 |