We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTBX3
(GeneCards)
ModelTBX3_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
0
ConsensusdvWGGTGbnRv
Best auROC (human)0.963
Best auROC (mouse)0.583
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)3
Aligned words420
TF familyTBX2-related factors {6.5.4}
TF subfamilyTBX3 {6.5.4.0.2}
HGNCHGNC:11602
EntrezGeneGeneID:6926
(SSTAR profile)
UniProt IDTBX3_HUMAN
UniProt ACO15119
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.345275
0.0005 6.102325
0.0001 7.4895499999999995
GTEx tissue expression atlas TBX3 expression
ReMap ChIP-seq dataset list TBX3 datasets
Motifs in JASPAR
PCM
ACGT
01134.047.0148.091.0
02160.072.0161.027.0
03248.02.073.097.0
0431.00.0388.01.0
055.056.0354.05.0
0615.03.06.0396.0
077.00.0407.06.0
0843.092.0183.0102.0
0966.0110.0178.066.0
10295.011.085.029.0
11178.038.0169.035.0
PWM
ACGT
010.241-0.7860.339-0.141
020.416-0.3710.423-1.318
030.851-3.413-0.357-0.078
04-1.187-4.2561.297-3.748
05-2.795-0.6161.205-2.795
06-1.864-3.162-2.6521.317
07-2.527-4.2561.344-2.652
08-0.873-0.130.549-0.029
09-0.4560.0460.522-0.456
101.024-2.142-0.208-1.25
110.522-0.9920.471-1.071