We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTBX5
(GeneCards)
ModelTBX5_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
D
Motif rank
0
ConsensusARGTGKSW
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words38
TF familyTBX2-related factors {6.5.4}
TF subfamilyTBX5 {6.5.4.0.4}
HGNCHGNC:11604
EntrezGeneGeneID:6910
(SSTAR profile)
UniProt IDTBX5_HUMAN
UniProt ACQ99593
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.185775
0.0005 5.822939999999999
0.0001 7.440295
GTEx tissue expression atlas TBX5 expression
ReMap ChIP-seq dataset list TBX5 datasets
Motifs in JASPAR
PCM
ACGT
0132.2590.02.2862.455
029.2291.52426.2470.0
030.00.037.00.0
040.00.7620.036.238
050.00.037.00.0
065.8420.7626.60423.792
070.7628.8924.33.048
0827.7921.7993.3234.085
PWM
ACGT
011.184-2.42-1.158-1.106
02-0.002-1.4310.984-2.42
03-2.42-2.421.317-2.42
04-2.42-1.808-2.421.297
05-2.42-2.421.317-2.42
06-0.409-1.808-0.3020.889
07-1.808-0.0360.909-0.944
081.039-1.324-0.876-0.711