Transcription factor | TBX5 (GeneCards) | ||||||||
Model | TBX5_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 8 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | ARGTGKSW | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 38 | ||||||||
TF family | TBX2-related factors {6.5.4} | ||||||||
TF subfamily | TBX5 {6.5.4.0.4} | ||||||||
HGNC | HGNC:11604 | ||||||||
EntrezGene | GeneID:6910 (SSTAR profile) | ||||||||
UniProt ID | TBX5_HUMAN | ||||||||
UniProt AC | Q99593 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | TBX5 expression | ||||||||
ReMap ChIP-seq dataset list | TBX5 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 32.259 | 0.0 | 2.286 | 2.455 |
02 | 9.229 | 1.524 | 26.247 | 0.0 |
03 | 0.0 | 0.0 | 37.0 | 0.0 |
04 | 0.0 | 0.762 | 0.0 | 36.238 |
05 | 0.0 | 0.0 | 37.0 | 0.0 |
06 | 5.842 | 0.762 | 6.604 | 23.792 |
07 | 0.762 | 8.89 | 24.3 | 3.048 |
08 | 27.792 | 1.799 | 3.323 | 4.085 |
A | C | G | T | |
---|---|---|---|---|
01 | 1.184 | -2.42 | -1.158 | -1.106 |
02 | -0.002 | -1.431 | 0.984 | -2.42 |
03 | -2.42 | -2.42 | 1.317 | -2.42 |
04 | -2.42 | -1.808 | -2.42 | 1.297 |
05 | -2.42 | -2.42 | 1.317 | -2.42 |
06 | -0.409 | -1.808 | -0.302 | 0.889 |
07 | -1.808 | -0.036 | 0.909 | -0.944 |
08 | 1.039 | -1.324 | -0.876 | -0.711 |