Model info
| Transcription factor | Tbx5 | ||||||||
| Model | TBX5_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 8 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ARGTGKSW | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 38 | ||||||||
| TF family | TBX2-related factors {6.5.4} | ||||||||
| TF subfamily | TBX5 {6.5.4.0.4} | ||||||||
| MGI | MGI:102541 | ||||||||
| EntrezGene | GeneID:21388 (SSTAR profile) | ||||||||
| UniProt ID | TBX5_MOUSE | ||||||||
| UniProt AC | P70326 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tbx5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 32.259 | 0.0 | 2.286 | 2.455 |
| 02 | 9.229 | 1.524 | 26.247 | 0.0 |
| 03 | 0.0 | 0.0 | 37.0 | 0.0 |
| 04 | 0.0 | 0.762 | 0.0 | 36.238 |
| 05 | 0.0 | 0.0 | 37.0 | 0.0 |
| 06 | 5.842 | 0.762 | 6.604 | 23.792 |
| 07 | 0.762 | 8.89 | 24.3 | 3.048 |
| 08 | 27.792 | 1.799 | 3.323 | 4.085 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.184 | -2.42 | -1.158 | -1.106 |
| 02 | -0.002 | -1.431 | 0.984 | -2.42 |
| 03 | -2.42 | -2.42 | 1.317 | -2.42 |
| 04 | -2.42 | -1.808 | -2.42 | 1.297 |
| 05 | -2.42 | -2.42 | 1.317 | -2.42 |
| 06 | -0.409 | -1.808 | -0.302 | 0.889 |
| 07 | -1.808 | -0.036 | 0.909 | -0.944 |
| 08 | 1.039 | -1.324 | -0.876 | -0.711 |