We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTCF7
(GeneCards)
ModelTCF7_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
0
ConsensusdvhvWSWTSAAARvnv
Best auROC (human)0.847
Best auROC (mouse)0.929
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)19
Aligned words500
TF familyTCF-7-related factors {4.1.3}
TF subfamilyTCF-7 (TCF-1) [1] {4.1.3.0.1}
HGNCHGNC:11639
EntrezGeneGeneID:6932
(SSTAR profile)
UniProt IDTCF7_HUMAN
UniProt ACP36402
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.63106
0.0005 6.48691
0.0001 8.221060000000001
GTEx tissue expression atlas TCF7 expression
ReMap ChIP-seq dataset list TCF7 datasets
Motifs in JASPAR
MA0769.1 (Tcf7; Mus musculus)
PCM
ACGT
01229.064.0137.070.0
02226.0121.095.058.0
03141.0226.064.069.0
04147.0240.079.034.0
05380.027.044.049.0
0615.0341.0137.07.0
07340.033.01.0126.0
0857.010.014.0419.0
0933.0350.0106.011.0
10480.06.03.011.0
11432.034.030.04.0
12450.01.036.013.0
1395.020.0379.06.0
14120.0107.0243.030.0
15164.0123.0151.062.0
16222.095.098.085.0
PWM
ACGT
010.6-0.6580.091-0.57
020.587-0.032-0.271-0.754
030.1190.587-0.658-0.584
040.160.646-0.452-1.27
051.104-1.489-1.022-0.918
06-2.0340.9960.091-2.694
070.993-1.298-3.9030.008
08-0.771-2.394-2.0961.201
09-1.2981.022-0.163-2.311
101.336-2.819-3.325-2.311
111.231-1.27-1.389-3.126
121.272-3.903-1.215-2.163
13-0.271-1.771.101-2.819
14-0.04-0.1530.659-1.389
150.269-0.0160.187-0.689
160.569-0.271-0.24-0.38