Transcription factor | Tcf7 | ||||||||
Model | TCF7_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvvvASWWSAAARvn | ||||||||
Best auROC (human) | 0.858 | ||||||||
Best auROC (mouse) | 0.944 | ||||||||
Peak sets in benchmark (human) | 7 | ||||||||
Peak sets in benchmark (mouse) | 19 | ||||||||
Aligned words | 499 | ||||||||
TF family | TCF-7-related factors {4.1.3} | ||||||||
TF subfamily | TCF-7 (TCF-1) [1] {4.1.3.0.1} | ||||||||
MGI | MGI:98507 | ||||||||
EntrezGene | GeneID:21414 (SSTAR profile) | ||||||||
UniProt ID | TCF7_MOUSE | ||||||||
UniProt AC | Q00417 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Tcf7 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 77.0 | 36.0 | 41.0 | 6.0 | 54.0 | 27.0 | 23.0 | 10.0 | 48.0 | 43.0 | 28.0 | 7.0 | 26.0 | 25.0 | 27.0 | 20.0 |
02 | 51.0 | 94.0 | 47.0 | 13.0 | 39.0 | 52.0 | 21.0 | 19.0 | 25.0 | 48.0 | 35.0 | 11.0 | 10.0 | 14.0 | 14.0 | 5.0 |
03 | 46.0 | 34.0 | 38.0 | 7.0 | 23.0 | 152.0 | 28.0 | 5.0 | 38.0 | 42.0 | 34.0 | 3.0 | 12.0 | 15.0 | 18.0 | 3.0 |
04 | 93.0 | 2.0 | 11.0 | 13.0 | 209.0 | 3.0 | 14.0 | 17.0 | 86.0 | 2.0 | 22.0 | 8.0 | 11.0 | 1.0 | 4.0 | 2.0 |
05 | 11.0 | 262.0 | 120.0 | 6.0 | 0.0 | 7.0 | 1.0 | 0.0 | 0.0 | 21.0 | 29.0 | 1.0 | 1.0 | 28.0 | 9.0 | 2.0 |
06 | 9.0 | 2.0 | 0.0 | 1.0 | 214.0 | 6.0 | 5.0 | 93.0 | 130.0 | 3.0 | 3.0 | 23.0 | 5.0 | 0.0 | 0.0 | 4.0 |
07 | 82.0 | 10.0 | 59.0 | 207.0 | 1.0 | 0.0 | 5.0 | 5.0 | 2.0 | 1.0 | 2.0 | 3.0 | 21.0 | 0.0 | 16.0 | 84.0 |
08 | 10.0 | 60.0 | 36.0 | 0.0 | 0.0 | 9.0 | 2.0 | 0.0 | 16.0 | 30.0 | 35.0 | 1.0 | 36.0 | 194.0 | 61.0 | 8.0 |
09 | 59.0 | 1.0 | 0.0 | 2.0 | 278.0 | 0.0 | 2.0 | 13.0 | 127.0 | 3.0 | 1.0 | 3.0 | 9.0 | 0.0 | 0.0 | 0.0 |
10 | 420.0 | 13.0 | 39.0 | 1.0 | 1.0 | 0.0 | 3.0 | 0.0 | 1.0 | 0.0 | 2.0 | 0.0 | 11.0 | 0.0 | 7.0 | 0.0 |
11 | 388.0 | 1.0 | 27.0 | 17.0 | 12.0 | 0.0 | 1.0 | 0.0 | 47.0 | 1.0 | 1.0 | 2.0 | 0.0 | 0.0 | 1.0 | 0.0 |
12 | 68.0 | 51.0 | 300.0 | 28.0 | 1.0 | 0.0 | 1.0 | 0.0 | 4.0 | 3.0 | 22.0 | 1.0 | 3.0 | 6.0 | 9.0 | 1.0 |
13 | 9.0 | 22.0 | 43.0 | 2.0 | 32.0 | 18.0 | 9.0 | 1.0 | 78.0 | 74.0 | 156.0 | 24.0 | 5.0 | 5.0 | 14.0 | 6.0 |
14 | 33.0 | 20.0 | 62.0 | 9.0 | 52.0 | 28.0 | 20.0 | 19.0 | 50.0 | 79.0 | 61.0 | 32.0 | 10.0 | 12.0 | 9.0 | 2.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.898 | 0.144 | 0.273 | -1.596 | 0.546 | -0.14 | -0.298 | -1.11 | 0.429 | 0.32 | -0.104 | -1.451 | -0.177 | -0.216 | -0.14 | -0.435 |
02 | 0.489 | 1.097 | 0.408 | -0.856 | 0.223 | 0.508 | -0.388 | -0.486 | -0.216 | 0.429 | 0.116 | -1.018 | -1.11 | -0.784 | -0.784 | -1.766 |
03 | 0.387 | 0.087 | 0.197 | -1.451 | -0.298 | 1.576 | -0.104 | -1.766 | 0.197 | 0.296 | 0.087 | -2.23 | -0.934 | -0.717 | -0.539 | -2.23 |
04 | 1.086 | -2.58 | -1.018 | -0.856 | 1.894 | -2.23 | -0.784 | -0.595 | 1.008 | -2.58 | -0.342 | -1.324 | -1.018 | -3.122 | -1.971 | -2.58 |
05 | -1.018 | 2.119 | 1.34 | -1.596 | -4.397 | -1.451 | -3.122 | -4.397 | -4.397 | -0.388 | -0.07 | -3.122 | -3.122 | -0.104 | -1.211 | -2.58 |
06 | -1.211 | -2.58 | -4.397 | -3.122 | 1.917 | -1.596 | -1.766 | 1.086 | 1.42 | -2.23 | -2.23 | -0.298 | -1.766 | -4.397 | -4.397 | -1.971 |
07 | 0.961 | -1.11 | 0.634 | 1.884 | -3.122 | -4.397 | -1.766 | -1.766 | -2.58 | -3.122 | -2.58 | -2.23 | -0.388 | -4.397 | -0.654 | 0.985 |
08 | -1.11 | 0.65 | 0.144 | -4.397 | -4.397 | -1.211 | -2.58 | -4.397 | -0.654 | -0.036 | 0.116 | -3.122 | 0.144 | 1.819 | 0.667 | -1.324 |
09 | 0.634 | -3.122 | -4.397 | -2.58 | 2.179 | -4.397 | -2.58 | -0.856 | 1.397 | -2.23 | -3.122 | -2.23 | -1.211 | -4.397 | -4.397 | -4.397 |
10 | 2.591 | -0.856 | 0.223 | -3.122 | -3.122 | -4.397 | -2.23 | -4.397 | -3.122 | -4.397 | -2.58 | -4.397 | -1.018 | -4.397 | -1.451 | -4.397 |
11 | 2.512 | -3.122 | -0.14 | -0.595 | -0.934 | -4.397 | -3.122 | -4.397 | 0.408 | -3.122 | -3.122 | -2.58 | -4.397 | -4.397 | -3.122 | -4.397 |
12 | 0.775 | 0.489 | 2.255 | -0.104 | -3.122 | -4.397 | -3.122 | -4.397 | -1.971 | -2.23 | -0.342 | -3.122 | -2.23 | -1.596 | -1.211 | -3.122 |
13 | -1.211 | -0.342 | 0.32 | -2.58 | 0.027 | -0.539 | -1.211 | -3.122 | 0.911 | 0.859 | 1.602 | -0.256 | -1.766 | -1.766 | -0.784 | -1.596 |
14 | 0.058 | -0.435 | 0.683 | -1.211 | 0.508 | -0.104 | -0.435 | -0.486 | 0.469 | 0.924 | 0.667 | 0.027 | -1.11 | -0.934 | -1.211 | -2.58 |