Model info
| Transcription factor | Tcf7 | ||||||||
| Model | TCF7_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vvRvWdSAAARvvvvv | ||||||||
| Best auROC (human) | 0.78 | ||||||||
| Best auROC (mouse) | 0.947 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 19 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | TCF-7-related factors {4.1.3} | ||||||||
| TF subfamily | TCF-7 (TCF-1) [1] {4.1.3.0.1} | ||||||||
| MGI | MGI:98507 | ||||||||
| EntrezGene | GeneID:21414 (SSTAR profile) | ||||||||
| UniProt ID | TCF7_MOUSE | ||||||||
| UniProt AC | Q00417 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tcf7 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 164.0 | 136.0 | 154.0 | 46.0 |
| 02 | 222.0 | 96.0 | 162.0 | 20.0 |
| 03 | 333.0 | 29.0 | 115.0 | 23.0 |
| 04 | 100.0 | 182.0 | 209.0 | 9.0 |
| 05 | 353.0 | 40.0 | 23.0 | 84.0 |
| 06 | 137.0 | 13.0 | 99.0 | 251.0 |
| 07 | 45.0 | 281.0 | 158.0 | 16.0 |
| 08 | 478.0 | 2.0 | 6.0 | 14.0 |
| 09 | 440.0 | 19.0 | 40.0 | 1.0 |
| 10 | 435.0 | 10.0 | 44.0 | 11.0 |
| 11 | 113.0 | 33.0 | 342.0 | 12.0 |
| 12 | 150.0 | 111.0 | 192.0 | 47.0 |
| 13 | 193.0 | 132.0 | 149.0 | 26.0 |
| 14 | 216.0 | 106.0 | 157.0 | 21.0 |
| 15 | 176.0 | 111.0 | 150.0 | 63.0 |
| 16 | 138.0 | 170.0 | 152.0 | 40.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.269 | 0.083 | 0.206 | -0.979 |
| 02 | 0.569 | -0.26 | 0.256 | -1.77 |
| 03 | 0.972 | -1.421 | -0.082 | -1.64 |
| 04 | -0.22 | 0.372 | 0.509 | -2.484 |
| 05 | 1.03 | -1.114 | -1.64 | -0.392 |
| 06 | 0.091 | -2.163 | -0.23 | 0.691 |
| 07 | -1.0 | 0.803 | 0.232 | -1.975 |
| 08 | 1.332 | -3.573 | -2.819 | -2.096 |
| 09 | 1.25 | -1.818 | -1.114 | -3.903 |
| 10 | 1.238 | -2.394 | -1.022 | -2.311 |
| 11 | -0.1 | -1.298 | 0.999 | -2.234 |
| 12 | 0.18 | -0.117 | 0.425 | -0.958 |
| 13 | 0.43 | 0.054 | 0.174 | -1.525 |
| 14 | 0.542 | -0.163 | 0.225 | -1.725 |
| 15 | 0.339 | -0.117 | 0.18 | -0.673 |
| 16 | 0.098 | 0.304 | 0.193 | -1.114 |