We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTEAD1
(GeneCards)
ModelTEAD1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusRCATTCCWdvvh
Best auROC (human)0.969
Best auROC (mouse)0.93
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)5
Aligned words500
TF familyTEF-1-related factors {3.6.1}
TF subfamilyTEF-1 (TEAD-1, TCF-13) {3.6.1.0.1}
HGNCHGNC:11714
EntrezGeneGeneID:7003
(SSTAR profile)
UniProt IDTEAD1_HUMAN
UniProt ACP28347
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.202665
0.0005 6.1247799999999994
0.0001 7.9854650000000005
GTEx tissue expression atlas TEAD1 expression
ReMap ChIP-seq dataset list TEAD1 datasets
Motifs in JASPAR
MA0090.1 (TEAD1; Homo sapiens)
MA0090.2 (TEAD1; Homo sapiens)
PCM
ACGT
01242.014.0215.029.0
0297.0380.020.03.0
03489.06.01.04.0
042.04.01.0493.0
0524.03.035.0438.0
062.0466.018.014.0
074.0450.02.044.0
08267.021.07.0205.0
0988.068.0272.072.0
1081.0193.0169.057.0
11120.0243.088.049.0
12215.097.058.0130.0
PWM
ACGT
010.655-2.0960.537-1.421
02-0.251.104-1.77-3.325
031.355-2.819-3.903-3.126
04-3.573-3.126-3.9031.363
05-1.6-3.325-1.2421.245
06-3.5731.307-1.868-2.096
07-3.1261.272-3.573-1.022
080.752-1.725-2.6940.49
09-0.346-0.5990.771-0.543
10-0.4270.430.298-0.771
11-0.040.659-0.346-0.918
120.537-0.25-0.7540.039