We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTead1
ModelTEAD1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnRMATTCCWRSvn
Best auROC (human)0.961
Best auROC (mouse)0.952
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)5
Aligned words439
TF familyTEF-1-related factors {3.6.1}
TF subfamilyTEF-1 (TEAD-1, TCF-13) {3.6.1.0.1}
MGIMGI:101876
EntrezGeneGeneID:21676
(SSTAR profile)
UniProt IDTEAD1_MOUSE
UniProt ACP30051
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.51096
0.0005 10.81377
0.0001 15.37432
GTEx tissue expression atlas Tead1 expression
Motifs in JASPAR
MA0090.1 (TEAD1; Homo sapiens)
MA0090.2 (TEAD1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0157.00.038.00.0126.01.025.05.067.03.022.01.039.02.051.01.0
0274.0207.08.00.01.05.00.00.027.0100.08.01.00.07.00.00.0
0399.02.01.00.0315.03.01.00.016.00.00.00.01.00.00.00.0
040.01.01.0429.00.00.00.05.00.00.00.02.00.00.00.00.0
050.00.00.00.01.00.00.00.00.01.00.00.049.01.09.0377.0
060.045.05.00.00.02.00.00.00.09.00.00.00.0369.05.03.0
070.00.00.00.01.0392.01.031.00.010.00.00.00.01.00.02.0
080.00.00.01.0235.017.026.0125.00.00.01.00.02.01.04.026.0
0941.014.0174.08.07.06.01.04.02.012.011.06.014.022.099.017.0
100.010.052.02.011.015.025.03.015.090.0165.015.01.05.027.02.0
116.07.012.02.045.047.09.019.052.086.0120.011.01.01.017.03.0
1239.020.033.012.067.025.018.031.041.048.039.030.03.05.022.05.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.726-4.2910.324-4.2911.516-3.001-0.089-1.6410.887-2.106-0.215-3.0010.35-2.4560.616-3.001
020.9862.011-1.198-4.291-3.001-1.641-4.291-4.291-0.0141.286-1.198-3.001-4.291-1.325-4.291-4.291
031.276-2.456-3.001-4.2912.43-2.106-3.001-4.291-0.527-4.291-4.291-4.291-3.001-4.291-4.291-4.291
04-4.291-3.001-3.0012.739-4.291-4.291-4.291-1.641-4.291-4.291-4.291-2.456-4.291-4.291-4.291-4.291
05-4.291-4.291-4.291-4.291-3.001-4.291-4.291-4.291-4.291-3.001-4.291-4.2910.576-3.001-1.0852.61
06-4.2910.492-1.641-4.291-4.291-2.456-4.291-4.291-4.291-1.085-4.291-4.291-4.2912.588-1.641-2.106
07-4.291-4.291-4.291-4.291-3.0012.649-3.0010.123-4.291-0.984-4.291-4.291-4.291-3.001-4.291-2.456
08-4.291-4.291-4.291-3.0012.138-0.468-0.0511.508-4.291-4.291-3.001-4.291-2.456-3.001-1.846-0.051
090.399-0.6581.838-1.198-1.325-1.47-3.001-1.846-2.456-0.807-0.892-1.47-0.658-0.2151.276-0.468
10-4.291-0.9840.635-2.456-0.892-0.59-0.089-2.106-0.591.1811.785-0.59-3.001-1.641-0.014-2.456
11-1.47-1.325-0.807-2.4560.4920.535-1.085-0.3590.6351.1351.467-0.892-3.001-3.001-0.468-2.106
120.35-0.3090.185-0.8070.887-0.089-0.4120.1230.3990.5560.350.09-2.106-1.641-0.215-1.641