We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTead1
ModelTEAD1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusRMATTCCWRSv
Best auROC (human)0.949
Best auROC (mouse)0.95
Peak sets in benchmark (human)14
Peak sets in benchmark (mouse)5
Aligned words500
TF familyTEF-1-related factors {3.6.1}
TF subfamilyTEF-1 (TEAD-1, TCF-13) {3.6.1.0.1}
MGIMGI:101876
EntrezGeneGeneID:21676
(SSTAR profile)
UniProt IDTEAD1_MOUSE
UniProt ACP30051
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.32405
0.0005 5.424004999999999
0.0001 7.720905
GTEx tissue expression atlas Tead1 expression
Motifs in JASPAR
MA0090.1 (TEAD1; Homo sapiens)
MA0090.2 (TEAD1; Homo sapiens)
PCM
ACGT
01303.00.0179.018.0
02108.0369.015.08.0
03494.03.03.00.0
040.02.01.0497.0
0541.01.011.0447.0
060.0493.07.00.0
073.0474.01.022.0
08287.024.032.0157.0
0977.053.0318.052.0
1021.0154.0305.020.0
11113.0168.0170.049.0
PWM
ACGT
010.878-4.40.355-1.868
02-0.1441.074-2.034-2.584
031.365-3.325-3.325-4.4
04-4.4-3.573-3.9031.371
05-1.09-3.903-2.3111.265
06-4.41.363-2.694-4.4
07-3.3251.324-3.903-1.681
080.824-1.6-1.3280.225
09-0.477-0.8410.926-0.86
10-1.7250.2060.885-1.77
11-0.10.2930.304-0.918