We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTEAD2
(GeneCards)
ModelTEAD2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
D
Motif rank
0
ConsensushbRMATTCCWRv
Best auROC (human)0.605
Best auROC (mouse)0.919
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)2
Aligned words308
TF familyTEF-1-related factors {3.6.1}
TF subfamilyTEF-4 (TEAD-2) {3.6.1.0.3}
HGNCHGNC:11715
EntrezGeneGeneID:8463
(SSTAR profile)
UniProt IDTEAD2_HUMAN
UniProt ACQ15562
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.71061
0.0005 5.702335
0.0001 7.733314999999999
GTEx tissue expression atlas TEAD2 expression
ReMap ChIP-seq dataset list TEAD2 datasets
Motifs in JASPAR
PCM
ACGT
0162.0124.047.075.0
0247.0128.060.073.0
03203.02.098.05.0
0454.0229.05.020.0
05299.02.01.06.0
062.07.06.0293.0
0723.01.03.0281.0
080.0300.04.04.0
090.0291.01.016.0
10162.016.06.0124.0
1143.013.0230.022.0
1235.064.0178.031.0
PWM
ACGT
01-0.2120.47-0.482-0.026
02-0.4820.501-0.244-0.052
030.958-3.1290.237-2.501
04-0.3471.078-2.501-1.297
051.343-3.129-3.473-2.356
06-3.129-2.23-2.3561.323
07-1.166-3.473-2.8731.281
08-4.0031.346-2.67-2.67
09-4.0031.316-3.473-1.504
100.734-1.504-2.3560.47
11-0.568-1.6931.082-1.208
12-0.767-0.1810.828-0.883