We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTEAD4
(GeneCards)
ModelTEAD4_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusRMATTCCWdvvhb
Best auROC (human)0.971
Best auROC (mouse)0.935
Peak sets in benchmark (human)57
Peak sets in benchmark (mouse)10
Aligned words500
TF familyTEF-1-related factors {3.6.1}
TF subfamilyTEF-3 (TEAD-4, TCF-13L1) {3.6.1.0.2}
HGNCHGNC:11717
EntrezGeneGeneID:7004
(SSTAR profile)
UniProt IDTEAD4_HUMAN
UniProt ACQ15561
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.460710000000001
0.0005 6.32371
0.0001 8.07572
GTEx tissue expression atlas TEAD4 expression
ReMap ChIP-seq dataset list TEAD4 datasets
Motifs in JASPAR
PCM
ACGT
01260.09.0199.032.0
02142.0325.028.05.0
03482.05.03.010.0
048.09.05.0478.0
0522.09.035.0434.0
0610.0467.09.014.0
071.0422.03.074.0
08212.031.011.0246.0
0978.070.0257.095.0
10119.096.0214.071.0
11141.0188.0117.054.0
12234.0101.062.0103.0
1380.085.0132.0203.0
PWM
ACGT
010.726-2.4840.46-1.328
020.1260.948-1.454-2.961
031.34-2.961-3.325-2.394
04-2.584-2.484-2.9611.332
05-1.681-2.484-1.2421.236
06-2.3941.309-2.484-2.096
07-3.9031.208-3.325-0.516
080.523-1.358-2.3110.671
09-0.464-0.570.714-0.271
10-0.049-0.260.533-0.556
110.1190.404-0.065-0.823
120.621-0.21-0.689-0.191
13-0.439-0.380.0540.48