Transcription factor | Tef | ||||||||
Model | TEF_MOUSE.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 14 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | TGdTKAYRTMdvYd | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 14 | ||||||||
TF family | C/EBP-related {1.1.8} | ||||||||
TF subfamily | PAR factors {1.1.8.2} | ||||||||
MGI | MGI:98663 | ||||||||
EntrezGene | GeneID:21685 (SSTAR profile) | ||||||||
UniProt ID | TEF_MOUSE | ||||||||
UniProt AC | Q9JLC6 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Tef expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 0.676 | 1.853 | 0.676 | 10.794 |
02 | 2.118 | 0.0 | 10.706 | 1.176 |
03 | 3.176 | 1.059 | 2.941 | 6.824 |
04 | 0.0 | 0.0 | 0.0 | 14.0 |
05 | 3.176 | 0.0 | 3.412 | 7.412 |
06 | 13.176 | 0.0 | 0.824 | 0.0 |
07 | 1.059 | 3.882 | 0.0 | 9.059 |
08 | 4.353 | 0.0 | 8.824 | 0.824 |
09 | 0.0 | 0.588 | 2.118 | 11.294 |
10 | 8.706 | 3.412 | 1.059 | 0.824 |
11 | 9.765 | 0.0 | 2.118 | 2.118 |
12 | 6.0 | 4.353 | 2.588 | 1.059 |
13 | 0.588 | 2.824 | 2.118 | 8.471 |
14 | 2.529 | 0.412 | 5.941 | 5.118 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.136 | -0.504 | -1.136 | 1.013 |
02 | -0.404 | -1.841 | 1.005 | -0.818 |
03 | -0.081 | -0.884 | -0.144 | 0.587 |
04 | -1.841 | -1.841 | -1.841 | 1.26 |
05 | -0.081 | -1.841 | -0.021 | 0.663 |
06 | 1.202 | -1.841 | -1.031 | -1.841 |
07 | -0.884 | 0.088 | -1.841 | 0.849 |
08 | 0.187 | -1.841 | 0.824 | -1.031 |
09 | -1.841 | -1.204 | -0.404 | 1.056 |
10 | 0.812 | -0.021 | -0.884 | -1.031 |
11 | 0.919 | -1.841 | -0.404 | -0.404 |
12 | 0.471 | 0.187 | -0.247 | -0.884 |
13 | -1.204 | -0.177 | -0.404 | 0.786 |
14 | -0.266 | -1.356 | 0.462 | 0.328 |