Model info
| Transcription factor | Tfcp2l1 | ||||||||
| Model | TF2L1_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 19 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddCYRGYYYhddCYRGhYb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.993 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 491 | ||||||||
| TF family | CP2-related factors {6.7.2} | ||||||||
| TF subfamily | CP2-L1 (LBP-9, CRTR-1) {6.7.2.0.2} | ||||||||
| MGI | MGI:2444691 | ||||||||
| EntrezGene | GeneID:81879 (SSTAR profile) | ||||||||
| UniProt ID | TF2L1_MOUSE | ||||||||
| UniProt AC | Q3UNW5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tfcp2l1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 209.0 | 51.0 | 153.0 | 77.0 |
| 02 | 219.0 | 24.0 | 112.0 | 135.0 |
| 03 | 0.0 | 482.0 | 7.0 | 1.0 |
| 04 | 12.0 | 302.0 | 0.0 | 176.0 |
| 05 | 172.0 | 0.0 | 269.0 | 49.0 |
| 06 | 0.0 | 8.0 | 482.0 | 0.0 |
| 07 | 48.0 | 125.0 | 8.0 | 309.0 |
| 08 | 24.0 | 96.0 | 2.0 | 368.0 |
| 09 | 12.0 | 296.0 | 16.0 | 166.0 |
| 10 | 158.0 | 142.0 | 47.0 | 143.0 |
| 11 | 202.0 | 64.0 | 157.0 | 67.0 |
| 12 | 140.0 | 20.0 | 183.0 | 147.0 |
| 13 | 0.0 | 462.0 | 21.0 | 7.0 |
| 14 | 34.0 | 284.0 | 1.0 | 171.0 |
| 15 | 151.0 | 4.0 | 266.0 | 69.0 |
| 16 | 2.0 | 30.0 | 457.0 | 1.0 |
| 17 | 79.0 | 169.0 | 33.0 | 209.0 |
| 18 | 58.0 | 100.0 | 37.0 | 295.0 |
| 19 | 45.0 | 211.0 | 71.0 | 163.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.529 | -0.859 | 0.22 | -0.457 |
| 02 | 0.575 | -1.58 | -0.088 | 0.096 |
| 03 | -4.383 | 1.36 | -2.675 | -3.885 |
| 04 | -2.214 | 0.895 | -4.383 | 0.359 |
| 05 | 0.336 | -4.383 | 0.78 | -0.898 |
| 06 | -4.383 | -2.564 | 1.36 | -4.383 |
| 07 | -0.918 | 0.02 | -2.564 | 0.918 |
| 08 | -1.58 | -0.24 | -3.554 | 1.092 |
| 09 | -2.214 | 0.875 | -1.956 | 0.301 |
| 10 | 0.252 | 0.146 | -0.938 | 0.153 |
| 11 | 0.495 | -0.638 | 0.245 | -0.593 |
| 12 | 0.132 | -1.75 | 0.397 | 0.18 |
| 13 | -4.383 | 1.318 | -1.705 | -2.675 |
| 14 | -1.25 | 0.834 | -3.885 | 0.33 |
| 15 | 0.207 | -3.107 | 0.769 | -0.564 |
| 16 | -3.554 | -1.369 | 1.307 | -3.885 |
| 17 | -0.432 | 0.318 | -1.278 | 0.529 |
| 18 | -0.734 | -0.2 | -1.169 | 0.872 |
| 19 | -0.98 | 0.538 | -0.536 | 0.283 |