Model info
| Transcription factor | Tfcp2l1 | ||||||||
| Model | TF2L1_MOUSE.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dRRCYGGYYb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.962 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | CP2-related factors {6.7.2} | ||||||||
| TF subfamily | CP2-L1 (LBP-9, CRTR-1) {6.7.2.0.2} | ||||||||
| MGI | MGI:2444691 | ||||||||
| EntrezGene | GeneID:81879 (SSTAR profile) | ||||||||
| UniProt ID | TF2L1_MOUSE | ||||||||
| UniProt AC | Q3UNW5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tfcp2l1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 207.0 | 34.0 | 193.0 | 66.0 |
| 02 | 302.0 | 7.0 | 170.0 | 21.0 |
| 03 | 332.0 | 20.0 | 111.0 | 37.0 |
| 04 | 0.0 | 499.0 | 0.0 | 1.0 |
| 05 | 41.0 | 94.0 | 0.0 | 365.0 |
| 06 | 2.0 | 0.0 | 494.0 | 4.0 |
| 07 | 0.0 | 2.0 | 496.0 | 2.0 |
| 08 | 90.0 | 146.0 | 9.0 | 255.0 |
| 09 | 33.0 | 75.0 | 13.0 | 379.0 |
| 10 | 26.0 | 167.0 | 87.0 | 220.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.5 | -1.27 | 0.43 | -0.628 |
| 02 | 0.875 | -2.694 | 0.304 | -1.725 |
| 03 | 0.969 | -1.77 | -0.117 | -1.189 |
| 04 | -4.4 | 1.375 | -4.4 | -3.903 |
| 05 | -1.09 | -0.281 | -4.4 | 1.063 |
| 06 | -3.573 | -4.4 | 1.365 | -3.126 |
| 07 | -4.4 | -3.573 | 1.369 | -3.573 |
| 08 | -0.324 | 0.154 | -2.484 | 0.707 |
| 09 | -1.298 | -0.503 | -2.163 | 1.101 |
| 10 | -1.525 | 0.287 | -0.357 | 0.56 |