Model info
| Transcription factor | TGIF2LX (GeneCards) | ||||||||
| Model | TF2LX_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RYhnTdACAKCTnTC | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 14 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | TGIF {3.1.4.6} | ||||||||
| HGNC | HGNC:18570 | ||||||||
| EntrezGene | GeneID:90316 (SSTAR profile) | ||||||||
| UniProt ID | TF2LX_HUMAN | ||||||||
| UniProt AC | Q8IUE1 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TGIF2LX expression | ||||||||
| ReMap ChIP-seq dataset list | TGIF2LX datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.25 | 0.25 | 4.25 | 1.25 |
| 02 | 1.0 | 8.0 | 0.0 | 5.0 |
| 03 | 4.0 | 2.0 | 1.0 | 7.0 |
| 04 | 7.0 | 3.0 | 2.0 | 2.0 |
| 05 | 2.0 | 1.0 | 0.0 | 11.0 |
| 06 | 2.0 | 0.0 | 10.0 | 2.0 |
| 07 | 14.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 12.0 | 0.0 | 2.0 |
| 09 | 14.0 | 0.0 | 0.0 | 0.0 |
| 10 | 1.0 | 2.0 | 8.0 | 3.0 |
| 11 | 0.0 | 12.0 | 0.0 | 2.0 |
| 12 | 0.25 | 0.25 | 1.25 | 12.25 |
| 13 | 1.25 | 1.25 | 10.25 | 1.25 |
| 14 | 0.5 | 0.5 | 1.5 | 11.5 |
| 15 | 1.75 | 10.75 | 0.75 | 0.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.762 | -1.52 | 0.166 | -0.778 |
| 02 | -0.919 | 0.733 | -1.841 | 0.308 |
| 03 | 0.114 | -0.447 | -0.919 | 0.611 |
| 04 | 0.611 | -0.128 | -0.447 | -0.447 |
| 05 | -0.447 | -0.919 | -1.841 | 1.031 |
| 06 | -0.447 | -1.841 | 0.941 | -0.447 |
| 07 | 1.26 | -1.841 | -1.841 | -1.841 |
| 08 | -1.841 | 1.113 | -1.841 | -0.447 |
| 09 | 1.26 | -1.841 | -1.841 | -1.841 |
| 10 | -0.919 | -0.447 | 0.733 | -0.128 |
| 11 | -1.841 | 1.113 | -1.841 | -0.447 |
| 12 | -1.52 | -1.52 | -0.778 | 1.133 |
| 13 | -0.778 | -0.778 | 0.964 | -0.778 |
| 14 | -1.277 | -1.277 | -0.655 | 1.073 |
| 15 | -0.546 | 1.009 | -1.082 | -1.082 |