We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTGIF2LX
(GeneCards)
ModelTF2LX_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length15
Quality
D
Motif rank
0
ConsensusRYhnTdACAKCTnTC
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words14
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyTGIF {3.1.4.6}
HGNCHGNC:18570
EntrezGeneGeneID:90316
(SSTAR profile)
UniProt IDTF2LX_HUMAN
UniProt ACQ8IUE1
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.89391
0.0005 5.66771
0.0001 7.30341
GTEx tissue expression atlas TGIF2LX expression
ReMap ChIP-seq dataset list TGIF2LX datasets
Motifs in JASPAR
PCM
ACGT
018.250.254.251.25
021.08.00.05.0
034.02.01.07.0
047.03.02.02.0
052.01.00.011.0
062.00.010.02.0
0714.00.00.00.0
080.012.00.02.0
0914.00.00.00.0
101.02.08.03.0
110.012.00.02.0
120.250.251.2512.25
131.251.2510.251.25
140.50.51.511.5
151.7510.750.750.75
PWM
ACGT
010.762-1.520.166-0.778
02-0.9190.733-1.8410.308
030.114-0.447-0.9190.611
040.611-0.128-0.447-0.447
05-0.447-0.919-1.8411.031
06-0.447-1.8410.941-0.447
071.26-1.841-1.841-1.841
08-1.8411.113-1.841-0.447
091.26-1.841-1.841-1.841
10-0.919-0.4470.733-0.128
11-1.8411.113-1.841-0.447
12-1.52-1.52-0.7781.133
13-0.778-0.7780.964-0.778
14-1.277-1.277-0.6551.073
15-0.5461.009-1.082-1.082