We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRELA
(GeneCards)
ModelTF65_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusndGGGRvTTTCChvn
Best auROC (human)0.988
Best auROC (mouse)0.91
Peak sets in benchmark (human)188
Peak sets in benchmark (mouse)99
Aligned words504
TF familyNF-kappaB-related factors {6.1.1}
TF subfamilyNF-kappaB p65 subunit-like factors {6.1.1.2}
HGNCHGNC:9955
EntrezGeneGeneID:5970
(SSTAR profile)
UniProt IDTF65_HUMAN
UniProt ACQ04206
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.285160000000001
0.0005 10.54431
0.0001 15.28351
GTEx tissue expression atlas RELA expression
ReMap ChIP-seq dataset list RELA datasets
Motifs in JASPAR
MA0107.1 (RELA; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0168.03.034.024.071.05.011.040.044.05.015.024.057.04.059.035.0
020.01.0236.03.00.00.016.01.00.01.0118.00.00.00.0123.00.0
030.00.00.00.00.00.02.00.03.01.0483.06.01.01.02.00.0
042.00.01.01.01.00.00.01.01.01.0450.035.01.00.03.02.0
053.00.02.00.01.00.00.00.0185.02.0251.016.010.00.026.03.0
0673.096.024.06.01.00.00.01.0178.050.031.020.010.04.01.04.0
07102.07.05.0148.05.02.00.0143.04.01.00.051.02.00.00.029.0
0822.010.08.073.01.00.01.08.01.00.00.04.00.07.07.0357.0
093.012.00.09.00.01.00.016.02.06.01.07.08.064.05.0365.0
100.013.00.00.03.080.00.00.00.05.01.00.011.0354.01.031.0
110.014.00.00.021.0401.01.029.00.01.01.00.01.015.02.013.0
125.09.04.04.0212.0131.025.063.03.00.00.01.04.010.018.010.0
1355.046.0100.023.093.031.010.016.07.011.021.08.010.017.037.014.0
1446.026.077.016.039.014.014.038.049.041.049.029.013.09.026.013.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.773-2.2320.085-0.2580.816-1.768-1.020.2460.341-1.768-0.719-0.2580.597-1.9730.6320.114
02-4.398-3.1242.013-2.232-4.398-4.398-0.656-3.124-4.398-3.1241.322-4.398-4.398-4.3981.363-4.398
03-4.398-4.398-4.398-4.398-4.398-4.398-2.582-4.398-2.232-3.1242.728-1.598-3.124-3.124-2.582-4.398
04-2.582-4.398-3.124-3.124-3.124-4.398-4.398-3.124-3.124-3.1242.6580.114-3.124-4.398-2.232-2.582
05-2.232-4.398-2.582-4.398-3.124-4.398-4.398-4.3981.77-2.5822.075-0.656-1.112-4.398-0.179-2.232
060.8431.116-0.258-1.598-3.124-4.398-4.398-3.1241.7320.467-0.006-0.437-1.112-1.973-3.124-1.973
071.176-1.452-1.7681.547-1.768-2.582-4.3981.513-1.973-3.124-4.3980.487-2.582-4.398-4.398-0.072
08-0.344-1.112-1.3260.843-3.124-4.398-3.124-1.326-3.124-4.398-4.398-1.973-4.398-1.452-1.4522.426
09-2.232-0.936-4.398-1.213-4.398-3.124-4.398-0.656-2.582-1.598-3.124-1.452-1.3260.713-1.7682.449
10-4.398-0.858-4.398-4.398-2.2320.934-4.398-4.398-4.398-1.768-3.124-4.398-1.022.418-3.124-0.006
11-4.398-0.786-4.398-4.398-0.392.543-3.124-0.072-4.398-3.124-3.124-4.398-3.124-0.719-2.582-0.858
12-1.768-1.213-1.973-1.9731.9061.426-0.2180.697-2.232-4.398-4.398-3.124-1.973-1.112-0.541-1.112
130.5620.3851.157-0.31.084-0.006-1.112-0.656-1.452-1.02-0.39-1.326-1.112-0.5970.169-0.786
140.385-0.1790.896-0.6560.221-0.786-0.7860.1950.4470.2710.447-0.072-0.858-1.213-0.179-0.858