Model info
| Transcription factor | RELA (GeneCards) | ||||||||
| Model | TF65_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hdGGGRhTTTCChv | ||||||||
| Best auROC (human) | 0.977 | ||||||||
| Best auROC (mouse) | 0.906 | ||||||||
| Peak sets in benchmark (human) | 188 | ||||||||
| Peak sets in benchmark (mouse) | 99 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NF-kappaB-related factors {6.1.1} | ||||||||
| TF subfamily | NF-kappaB p65 subunit-like factors {6.1.1.2} | ||||||||
| HGNC | HGNC:9955 | ||||||||
| EntrezGene | GeneID:5970 (SSTAR profile) | ||||||||
| UniProt ID | TF65_HUMAN | ||||||||
| UniProt AC | Q04206 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | RELA expression | ||||||||
| ReMap ChIP-seq dataset list | RELA datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 136.0 | 194.0 | 66.0 | 104.0 |
| 02 | 239.0 | 39.0 | 65.0 | 157.0 |
| 03 | 10.0 | 7.0 | 460.0 | 23.0 |
| 04 | 3.0 | 0.0 | 490.0 | 7.0 |
| 05 | 5.0 | 0.0 | 451.0 | 44.0 |
| 06 | 278.0 | 5.0 | 198.0 | 19.0 |
| 07 | 270.0 | 119.0 | 33.0 | 78.0 |
| 08 | 120.0 | 9.0 | 2.0 | 369.0 |
| 09 | 5.0 | 9.0 | 5.0 | 481.0 |
| 10 | 4.0 | 90.0 | 0.0 | 406.0 |
| 11 | 8.0 | 465.0 | 1.0 | 26.0 |
| 12 | 12.0 | 467.0 | 3.0 | 18.0 |
| 13 | 214.0 | 179.0 | 38.0 | 69.0 |
| 14 | 163.0 | 109.0 | 167.0 | 61.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.083 | 0.435 | -0.628 | -0.181 |
| 02 | 0.642 | -1.138 | -0.643 | 0.225 |
| 03 | -2.394 | -2.694 | 1.294 | -1.64 |
| 04 | -3.325 | -4.4 | 1.357 | -2.694 |
| 05 | -2.961 | -4.4 | 1.274 | -1.022 |
| 06 | 0.793 | -2.961 | 0.455 | -1.818 |
| 07 | 0.763 | -0.049 | -1.298 | -0.464 |
| 08 | -0.04 | -2.484 | -3.573 | 1.074 |
| 09 | -2.961 | -2.484 | -2.961 | 1.338 |
| 10 | -3.126 | -0.324 | -4.4 | 1.17 |
| 11 | -2.584 | 1.305 | -3.903 | -1.525 |
| 12 | -2.234 | 1.309 | -3.325 | -1.868 |
| 13 | 0.533 | 0.355 | -1.163 | -0.584 |
| 14 | 0.263 | -0.135 | 0.287 | -0.705 |