We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorRELA
(GeneCards)
ModelTF65_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensushdGGGRhTTTCChv
Best auROC (human)0.977
Best auROC (mouse)0.906
Peak sets in benchmark (human)188
Peak sets in benchmark (mouse)99
Aligned words500
TF familyNF-kappaB-related factors {6.1.1}
TF subfamilyNF-kappaB p65 subunit-like factors {6.1.1.2}
HGNCHGNC:9955
EntrezGeneGeneID:5970
(SSTAR profile)
UniProt IDTF65_HUMAN
UniProt ACQ04206
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.27621
0.0005 5.42106
0.0001 7.74361
GTEx tissue expression atlas RELA expression
ReMap ChIP-seq dataset list RELA datasets
Motifs in JASPAR
PCM
ACGT
01136.0194.066.0104.0
02239.039.065.0157.0
0310.07.0460.023.0
043.00.0490.07.0
055.00.0451.044.0
06278.05.0198.019.0
07270.0119.033.078.0
08120.09.02.0369.0
095.09.05.0481.0
104.090.00.0406.0
118.0465.01.026.0
1212.0467.03.018.0
13214.0179.038.069.0
14163.0109.0167.061.0
PWM
ACGT
010.0830.435-0.628-0.181
020.642-1.138-0.6430.225
03-2.394-2.6941.294-1.64
04-3.325-4.41.357-2.694
05-2.961-4.41.274-1.022
060.793-2.9610.455-1.818
070.763-0.049-1.298-0.464
08-0.04-2.484-3.5731.074
09-2.961-2.484-2.9611.338
10-3.126-0.324-4.41.17
11-2.5841.305-3.903-1.525
12-2.2341.309-3.325-1.868
130.5330.355-1.163-0.584
140.263-0.1350.287-0.705