Model info
| Transcription factor | Rela | ||||||||
| Model | TF65_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | KGGRvTTTCCM | ||||||||
| Best auROC (human) | 0.974 | ||||||||
| Best auROC (mouse) | 0.931 | ||||||||
| Peak sets in benchmark (human) | 188 | ||||||||
| Peak sets in benchmark (mouse) | 99 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NF-kappaB-related factors {6.1.1} | ||||||||
| TF subfamily | NF-kappaB p65 subunit-like factors {6.1.1.2} | ||||||||
| MGI | MGI:103290 | ||||||||
| EntrezGene | GeneID:19697 (SSTAR profile) | ||||||||
| UniProt ID | TF65_MOUSE | ||||||||
| UniProt AC | Q04207 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Rela expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 35.0 | 24.0 | 288.0 | 153.0 |
| 02 | 12.0 | 3.0 | 469.0 | 16.0 |
| 03 | 4.0 | 1.0 | 461.0 | 34.0 |
| 04 | 275.0 | 23.0 | 187.0 | 15.0 |
| 05 | 206.0 | 150.0 | 94.0 | 50.0 |
| 06 | 0.0 | 27.0 | 3.0 | 470.0 |
| 07 | 4.0 | 14.0 | 9.0 | 473.0 |
| 08 | 7.0 | 118.0 | 8.0 | 367.0 |
| 09 | 4.0 | 471.0 | 3.0 | 22.0 |
| 10 | 5.0 | 466.0 | 1.0 | 28.0 |
| 11 | 119.0 | 292.0 | 32.0 | 57.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.242 | -1.6 | 0.828 | 0.2 |
| 02 | -2.234 | -3.325 | 1.313 | -1.975 |
| 03 | -3.126 | -3.903 | 1.296 | -1.27 |
| 04 | 0.782 | -1.64 | 0.399 | -2.034 |
| 05 | 0.495 | 0.18 | -0.281 | -0.898 |
| 06 | -4.4 | -1.489 | -3.325 | 1.315 |
| 07 | -3.126 | -2.096 | -2.484 | 1.322 |
| 08 | -2.694 | -0.057 | -2.584 | 1.069 |
| 09 | -3.126 | 1.317 | -3.325 | -1.681 |
| 10 | -2.961 | 1.307 | -3.903 | -1.454 |
| 11 | -0.049 | 0.841 | -1.328 | -0.771 |