Transcription factor | Rela | ||||||||
Model | TF65_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | KGGRvTTTCCM | ||||||||
Best auROC (human) | 0.974 | ||||||||
Best auROC (mouse) | 0.931 | ||||||||
Peak sets in benchmark (human) | 188 | ||||||||
Peak sets in benchmark (mouse) | 99 | ||||||||
Aligned words | 500 | ||||||||
TF family | NF-kappaB-related factors {6.1.1} | ||||||||
TF subfamily | NF-kappaB p65 subunit-like factors {6.1.1.2} | ||||||||
MGI | MGI:103290 | ||||||||
EntrezGene | GeneID:19697 (SSTAR profile) | ||||||||
UniProt ID | TF65_MOUSE | ||||||||
UniProt AC | Q04207 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Rela expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 35.0 | 24.0 | 288.0 | 153.0 |
02 | 12.0 | 3.0 | 469.0 | 16.0 |
03 | 4.0 | 1.0 | 461.0 | 34.0 |
04 | 275.0 | 23.0 | 187.0 | 15.0 |
05 | 206.0 | 150.0 | 94.0 | 50.0 |
06 | 0.0 | 27.0 | 3.0 | 470.0 |
07 | 4.0 | 14.0 | 9.0 | 473.0 |
08 | 7.0 | 118.0 | 8.0 | 367.0 |
09 | 4.0 | 471.0 | 3.0 | 22.0 |
10 | 5.0 | 466.0 | 1.0 | 28.0 |
11 | 119.0 | 292.0 | 32.0 | 57.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.242 | -1.6 | 0.828 | 0.2 |
02 | -2.234 | -3.325 | 1.313 | -1.975 |
03 | -3.126 | -3.903 | 1.296 | -1.27 |
04 | 0.782 | -1.64 | 0.399 | -2.034 |
05 | 0.495 | 0.18 | -0.281 | -0.898 |
06 | -4.4 | -1.489 | -3.325 | 1.315 |
07 | -3.126 | -2.096 | -2.484 | 1.322 |
08 | -2.694 | -0.057 | -2.584 | 1.069 |
09 | -3.126 | 1.317 | -3.325 | -1.681 |
10 | -2.961 | 1.307 | -3.903 | -1.454 |
11 | -0.049 | 0.841 | -1.328 | -0.771 |