We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTFAP4
(GeneCards)
ModelTFAP4_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensushCAGCTGdKbnvvn
Best auROC (human)0.924
Best auROC (mouse)
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)
Aligned words502
TF familybHLH-ZIP factors {1.2.6}
TF subfamilyAP-4 {1.2.6.4}
HGNCHGNC:11745
EntrezGeneGeneID:7023
(SSTAR profile)
UniProt IDTFAP4_HUMAN
UniProt ACQ01664
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.785310000000001
0.0005 8.75096
0.0001 15.935760000000002
GTEx tissue expression atlas TFAP4 expression
ReMap ChIP-seq dataset list TFAP4 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.0110.00.00.01.0209.00.00.00.075.02.00.00.0103.00.00.0
021.00.00.00.0494.00.01.02.02.00.00.00.00.00.00.00.0
031.013.0482.01.00.00.00.00.00.00.01.00.00.00.01.01.0
040.01.00.00.02.011.00.00.04.0479.00.01.00.02.00.00.0
050.00.00.06.00.01.00.0492.00.00.00.00.00.00.00.01.0
060.00.00.00.00.00.00.01.00.00.00.00.01.01.0495.02.0
070.00.00.01.00.00.01.00.0176.014.0129.0176.01.00.01.01.0
0811.015.079.072.00.00.00.014.014.013.050.054.09.07.076.086.0
090.017.09.08.05.07.08.015.012.087.023.083.024.071.060.071.0
1019.07.07.08.072.051.021.038.017.037.038.08.057.043.030.047.0
1193.043.013.016.052.051.015.020.026.035.025.010.03.041.029.028.0
12118.019.027.010.048.047.028.047.031.016.029.06.022.09.018.025.0
1320.0103.056.040.029.022.018.022.016.027.044.015.016.015.040.017.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-4.41.25-4.4-4.4-3.1261.89-4.4-4.4-4.40.868-2.584-4.4-4.41.184-4.4-4.4
02-3.126-4.4-4.4-4.42.749-4.4-3.126-2.584-2.584-4.4-4.4-4.4-4.4-4.4-4.4-4.4
03-3.126-0.862.724-3.126-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-3.126-3.126
04-4.4-3.126-4.4-4.4-2.584-1.022-4.4-4.4-1.9752.718-4.4-3.126-4.4-2.584-4.4-4.4
05-4.4-4.4-4.4-1.6-4.4-3.126-4.42.745-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126
06-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4-4.4-3.126-3.1262.751-2.584
07-4.4-4.4-4.4-3.126-4.4-4.4-3.126-4.41.718-0.7881.4081.718-3.126-4.4-3.126-3.126
08-1.022-0.7210.920.828-4.4-4.4-4.4-0.788-0.788-0.860.4650.542-1.215-1.4540.8811.004
09-4.4-0.599-1.215-1.328-1.77-1.454-1.328-0.721-0.9381.016-0.3020.969-0.260.8140.6460.814
10-0.49-1.454-1.454-1.3280.8280.485-0.3920.193-0.5990.1670.193-1.3280.5950.316-0.040.404
111.0820.316-0.86-0.6580.5040.485-0.721-0.439-0.1810.112-0.22-1.114-2.2340.269-0.074-0.108
121.32-0.49-0.144-1.1140.4250.404-0.1080.404-0.008-0.658-0.074-1.6-0.346-1.215-0.543-0.22
13-0.4391.1840.5780.244-0.074-0.346-0.543-0.346-0.658-0.1440.339-0.721-0.658-0.7210.244-0.599