We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTFCP2
(GeneCards)
ModelTFCP2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length16
Quality
D
Motif rank
0
ConsensusSSCWGvnMdvRCMRGM
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words13
TF familyCP2-related factors {6.7.2}
TF subfamilyCP2 (LSF, SEF) {6.7.2.0.1}
HGNCHGNC:11748
EntrezGeneGeneID:7024
(SSTAR profile)
UniProt IDTFCP2_HUMAN
UniProt ACQ12800
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.740209999999999
0.0005 5.40471
0.0001 6.78176
GTEx tissue expression atlas TFCP2 expression
ReMap ChIP-seq dataset list TFCP2 datasets
Motifs in JASPAR
PCM
ACGT
010.5454.3026.5561.597
020.07.8152.632.555
032.25410.370.00.376
043.4190.1882.4426.951
050.00.75111.1971.052
065.7863.6822.481.052
074.1333.5322.4052.931
083.1566.5380.3762.931
094.2830.3763.1565.185
102.1423.1946.1241.54
115.8240.1886.8010.188
120.010.8212.1790.0
132.2549.3180.01.428
145.8990.1884.6212.292
150.00.013.00.0
169.5431.4280.6761.353
PWM
ACGT
01-1.1880.2390.615-0.553
02-1.8030.776-0.174-0.197
03-0.2961.04-1.803-1.342
040.043-1.546-0.2330.668
05-1.803-1.0271.113-0.832
060.5020.105-0.221-0.832
070.2040.07-0.245-0.086
08-0.0240.612-1.342-0.086
090.235-1.342-0.0240.404
10-0.335-0.0150.553-0.579
110.508-1.5460.648-1.546
12-1.8031.08-0.322-1.803
13-0.2960.94-1.803-0.632
140.519-1.5460.302-0.283
15-1.803-1.8031.254-1.803
160.962-0.632-1.083-0.669