Model info
| Transcription factor | Tfcp2 | ||||||||
| Model | TFCP2_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | SSCWGvnMdvRCMRGM | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 13 | ||||||||
| TF family | CP2-related factors {6.7.2} | ||||||||
| TF subfamily | CP2 (LSF, SEF) {6.7.2.0.1} | ||||||||
| MGI | MGI:98509 | ||||||||
| EntrezGene | GeneID:21422 (SSTAR profile) | ||||||||
| UniProt ID | TFCP2_MOUSE | ||||||||
| UniProt AC | Q9ERA0 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tfcp2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.545 | 4.302 | 6.556 | 1.597 |
| 02 | 0.0 | 7.815 | 2.63 | 2.555 |
| 03 | 2.254 | 10.37 | 0.0 | 0.376 |
| 04 | 3.419 | 0.188 | 2.442 | 6.951 |
| 05 | 0.0 | 0.751 | 11.197 | 1.052 |
| 06 | 5.786 | 3.682 | 2.48 | 1.052 |
| 07 | 4.133 | 3.532 | 2.405 | 2.931 |
| 08 | 3.156 | 6.538 | 0.376 | 2.931 |
| 09 | 4.283 | 0.376 | 3.156 | 5.185 |
| 10 | 2.142 | 3.194 | 6.124 | 1.54 |
| 11 | 5.824 | 0.188 | 6.801 | 0.188 |
| 12 | 0.0 | 10.821 | 2.179 | 0.0 |
| 13 | 2.254 | 9.318 | 0.0 | 1.428 |
| 14 | 5.899 | 0.188 | 4.621 | 2.292 |
| 15 | 0.0 | 0.0 | 13.0 | 0.0 |
| 16 | 9.543 | 1.428 | 0.676 | 1.353 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.188 | 0.239 | 0.615 | -0.553 |
| 02 | -1.803 | 0.776 | -0.174 | -0.197 |
| 03 | -0.296 | 1.04 | -1.803 | -1.342 |
| 04 | 0.043 | -1.546 | -0.233 | 0.668 |
| 05 | -1.803 | -1.027 | 1.113 | -0.832 |
| 06 | 0.502 | 0.105 | -0.221 | -0.832 |
| 07 | 0.204 | 0.07 | -0.245 | -0.086 |
| 08 | -0.024 | 0.612 | -1.342 | -0.086 |
| 09 | 0.235 | -1.342 | -0.024 | 0.404 |
| 10 | -0.335 | -0.015 | 0.553 | -0.579 |
| 11 | 0.508 | -1.546 | 0.648 | -1.546 |
| 12 | -1.803 | 1.08 | -0.322 | -1.803 |
| 13 | -0.296 | 0.94 | -1.803 | -0.632 |
| 14 | 0.519 | -1.546 | 0.302 | -0.283 |
| 15 | -1.803 | -1.803 | 1.254 | -1.803 |
| 16 | 0.962 | -0.632 | -1.083 | -0.669 |