Model info
| Transcription factor | TCF3 (GeneCards) | ||||||||
| Model | TFE2_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vMCASCTGShn | ||||||||
| Best auROC (human) | 0.926 | ||||||||
| Best auROC (mouse) | 0.977 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 60 | ||||||||
| Aligned words | 503 | ||||||||
| TF family | E2A-related factors {1.2.1} | ||||||||
| TF subfamily | E2A (TCF-3, ITF-1) {1.2.1.0.1} | ||||||||
| HGNC | HGNC:11633 | ||||||||
| EntrezGene | GeneID:6929 (SSTAR profile) | ||||||||
| UniProt ID | TFE2_HUMAN | ||||||||
| UniProt AC | P15923 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TCF3 expression | ||||||||
| ReMap ChIP-seq dataset list | TCF3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 111.0 | 247.0 | 126.0 | 16.0 |
| 02 | 251.0 | 162.0 | 85.0 | 2.0 |
| 03 | 7.0 | 490.0 | 3.0 | 0.0 |
| 04 | 497.0 | 0.0 | 0.0 | 3.0 |
| 05 | 2.0 | 163.0 | 327.0 | 8.0 |
| 06 | 2.0 | 397.0 | 101.0 | 0.0 |
| 07 | 0.0 | 1.0 | 1.0 | 498.0 |
| 08 | 4.0 | 3.0 | 492.0 | 1.0 |
| 09 | 3.0 | 374.0 | 75.0 | 48.0 |
| 10 | 253.0 | 80.0 | 28.0 | 139.0 |
| 11 | 63.0 | 116.0 | 205.0 | 116.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.117 | 0.675 | 0.008 | -1.975 |
| 02 | 0.691 | 0.256 | -0.38 | -3.573 |
| 03 | -2.694 | 1.357 | -3.325 | -4.4 |
| 04 | 1.371 | -4.4 | -4.4 | -3.325 |
| 05 | -3.573 | 0.263 | 0.954 | -2.584 |
| 06 | -3.573 | 1.147 | -0.21 | -4.4 |
| 07 | -4.4 | -3.903 | -3.903 | 1.373 |
| 08 | -3.126 | -3.325 | 1.361 | -3.903 |
| 09 | -3.325 | 1.088 | -0.503 | -0.938 |
| 10 | 0.699 | -0.439 | -1.454 | 0.105 |
| 11 | -0.673 | -0.074 | 0.49 | -0.074 |