We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTCF3
(GeneCards)
ModelTFE2_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusvMCASCTGShn
Best auROC (human)0.926
Best auROC (mouse)0.977
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)60
Aligned words503
TF familyE2A-related factors {1.2.1}
TF subfamilyE2A (TCF-3, ITF-1) {1.2.1.0.1}
HGNCHGNC:11633
EntrezGeneGeneID:6929
(SSTAR profile)
UniProt IDTFE2_HUMAN
UniProt ACP15923
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.873295
0.0005 4.938465
0.0001 7.551995
GTEx tissue expression atlas TCF3 expression
ReMap ChIP-seq dataset list TCF3 datasets
Motifs in JASPAR
MA0091.1 (TAL1::TCF3; Homo sapiens)
MA0092.1 (Hand1::Tcf3; Mus musculus)
MA0522.1 (Tcf3; Mus musculus)
MA0522.2 (TCF3; Homo sapiens)
PCM
ACGT
01111.0247.0126.016.0
02251.0162.085.02.0
037.0490.03.00.0
04497.00.00.03.0
052.0163.0327.08.0
062.0397.0101.00.0
070.01.01.0498.0
084.03.0492.01.0
093.0374.075.048.0
10253.080.028.0139.0
1163.0116.0205.0116.0
PWM
ACGT
01-0.1170.6750.008-1.975
020.6910.256-0.38-3.573
03-2.6941.357-3.325-4.4
041.371-4.4-4.4-3.325
05-3.5730.2630.954-2.584
06-3.5731.147-0.21-4.4
07-4.4-3.903-3.9031.373
08-3.126-3.3251.361-3.903
09-3.3251.088-0.503-0.938
100.699-0.439-1.4540.105
11-0.673-0.0740.49-0.074