Model info
| Transcription factor | TGIF1 (GeneCards) | ||||||||
| Model | TGIF1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 7 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WGACAGb | ||||||||
| Best auROC (human) | 0.861 | ||||||||
| Best auROC (mouse) | 0.976 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 5 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | TGIF {3.1.4.6} | ||||||||
| HGNC | HGNC:11776 | ||||||||
| EntrezGene | GeneID:7050 (SSTAR profile) | ||||||||
| UniProt ID | TGIF1_HUMAN | ||||||||
| UniProt AC | Q15583 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TGIF1 expression | ||||||||
| ReMap ChIP-seq dataset list | TGIF1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 83.0 | 16.0 | 49.0 | 352.0 |
| 02 | 2.0 | 2.0 | 494.0 | 2.0 |
| 03 | 456.0 | 1.0 | 43.0 | 0.0 |
| 04 | 39.0 | 407.0 | 45.0 | 9.0 |
| 05 | 494.0 | 1.0 | 1.0 | 4.0 |
| 06 | 44.0 | 38.0 | 412.0 | 6.0 |
| 07 | 59.0 | 223.0 | 158.0 | 60.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.403 | -1.975 | -0.918 | 1.027 |
| 02 | -3.573 | -3.573 | 1.365 | -3.573 |
| 03 | 1.285 | -3.903 | -1.044 | -4.4 |
| 04 | -1.138 | 1.172 | -1.0 | -2.484 |
| 05 | 1.365 | -3.903 | -3.903 | -3.126 |
| 06 | -1.022 | -1.163 | 1.184 | -2.819 |
| 07 | -0.737 | 0.573 | 0.232 | -0.721 |