We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTGIF1
(GeneCards)
ModelTGIF1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length7
Quality
A
Motif rank
0
ConsensusWGACAGb
Best auROC (human)0.861
Best auROC (mouse)0.976
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)5
Aligned words500
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyTGIF {3.1.4.6}
HGNCHGNC:11776
EntrezGeneGeneID:7050
(SSTAR profile)
UniProt IDTGIF1_HUMAN
UniProt ACQ15583
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.451875
0.0005 5.796595
0.0001 7.21926
GTEx tissue expression atlas TGIF1 expression
ReMap ChIP-seq dataset list TGIF1 datasets
Motifs in JASPAR
PCM
ACGT
0183.016.049.0352.0
022.02.0494.02.0
03456.01.043.00.0
0439.0407.045.09.0
05494.01.01.04.0
0644.038.0412.06.0
0759.0223.0158.060.0
PWM
ACGT
01-0.403-1.975-0.9181.027
02-3.573-3.5731.365-3.573
031.285-3.903-1.044-4.4
04-1.1381.172-1.0-2.484
051.365-3.903-3.903-3.126
06-1.022-1.1631.184-2.819
07-0.7370.5730.232-0.721