Model info
| Transcription factor | Tgif1 | ||||||||
| Model | TGIF1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TGACAGSdv | ||||||||
| Best auROC (human) | 0.786 | ||||||||
| Best auROC (mouse) | 0.979 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 5 | ||||||||
| Aligned words | 137 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | TGIF {3.1.4.6} | ||||||||
| MGI | MGI:1194497 | ||||||||
| EntrezGene | GeneID:21815 (SSTAR profile) | ||||||||
| UniProt ID | TGIF1_MOUSE | ||||||||
| UniProt AC | P70284 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Tgif1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2.0 | 2.0 | 1.0 | 131.0 |
| 02 | 0.0 | 3.0 | 133.0 | 0.0 |
| 03 | 129.0 | 6.0 | 0.0 | 1.0 |
| 04 | 2.0 | 132.0 | 1.0 | 1.0 |
| 05 | 134.0 | 1.0 | 1.0 | 0.0 |
| 06 | 14.0 | 4.0 | 117.0 | 1.0 |
| 07 | 8.0 | 78.0 | 30.0 | 20.0 |
| 08 | 28.0 | 19.0 | 20.0 | 69.0 |
| 09 | 24.0 | 28.0 | 70.0 | 14.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.39 | -2.39 | -2.761 | 1.323 |
| 02 | -3.356 | -2.12 | 1.338 | -3.356 |
| 03 | 1.307 | -1.584 | -3.356 | -2.761 |
| 04 | -2.39 | 1.33 | -2.761 | -2.761 |
| 05 | 1.345 | -2.761 | -2.761 | -3.356 |
| 06 | -0.839 | -1.908 | 1.211 | -2.761 |
| 07 | -1.34 | 0.81 | -0.121 | -0.507 |
| 08 | -0.187 | -0.555 | -0.507 | 0.69 |
| 09 | -0.334 | -0.187 | 0.704 | -0.839 |