Transcription factor | Tgif1 | ||||||||
Model | TGIF1_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 9 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | TGACAGSdv | ||||||||
Best auROC (human) | 0.786 | ||||||||
Best auROC (mouse) | 0.979 | ||||||||
Peak sets in benchmark (human) | 2 | ||||||||
Peak sets in benchmark (mouse) | 5 | ||||||||
Aligned words | 137 | ||||||||
TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
TF subfamily | TGIF {3.1.4.6} | ||||||||
MGI | MGI:1194497 | ||||||||
EntrezGene | GeneID:21815 (SSTAR profile) | ||||||||
UniProt ID | TGIF1_MOUSE | ||||||||
UniProt AC | P70284 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Tgif1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 2.0 | 2.0 | 1.0 | 131.0 |
02 | 0.0 | 3.0 | 133.0 | 0.0 |
03 | 129.0 | 6.0 | 0.0 | 1.0 |
04 | 2.0 | 132.0 | 1.0 | 1.0 |
05 | 134.0 | 1.0 | 1.0 | 0.0 |
06 | 14.0 | 4.0 | 117.0 | 1.0 |
07 | 8.0 | 78.0 | 30.0 | 20.0 |
08 | 28.0 | 19.0 | 20.0 | 69.0 |
09 | 24.0 | 28.0 | 70.0 | 14.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -2.39 | -2.39 | -2.761 | 1.323 |
02 | -3.356 | -2.12 | 1.338 | -3.356 |
03 | 1.307 | -1.584 | -3.356 | -2.761 |
04 | -2.39 | 1.33 | -2.761 | -2.761 |
05 | 1.345 | -2.761 | -2.761 | -3.356 |
06 | -0.839 | -1.908 | 1.211 | -2.761 |
07 | -1.34 | 0.81 | -0.121 | -0.507 |
08 | -0.187 | -0.555 | -0.507 | 0.69 |
09 | -0.334 | -0.187 | 0.704 | -0.839 |