We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTGIF2
(GeneCards)
ModelTGIF2_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length11
Quality
D
Motif rank
0
ConsensusnTGACASvYRY
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words46893
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyTGIF {3.1.4.6}
HGNCHGNC:15764
EntrezGeneGeneID:60436
(SSTAR profile)
UniProt IDTGIF2_HUMAN
UniProt ACQ9GZN2
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.314425
0.0005 5.3866
0.0001 7.57141
GTEx tissue expression atlas TGIF2 expression
ReMap ChIP-seq dataset list TGIF2 datasets
Motifs in JASPAR
PCM
ACGT
0115740.257200.258788.2514174.25
021194.751185.751158.7542363.75
031077.751079.7542672.751072.75
0445208.093.0301.0301.0
05102.045584.0118.099.0
0644344.25185.251187.25186.25
071125.256575.2532432.255770.25
087250.523557.511105.53989.5
092738.754441.751963.7536758.75
104777.753699.7533300.754124.75
114739.254868.254867.2531428.25
PWM
ACGT
010.316-0.466-0.2670.211
02-2.26-2.268-2.2911.306
03-2.363-2.3611.313-2.368
041.371-4.787-3.632-3.632
05-4.6971.379-4.555-4.726
061.352-4.112-2.267-4.107
07-2.32-0.5571.039-0.687
08-0.4590.719-0.033-1.056
09-1.432-0.949-1.7641.164
10-0.876-1.1311.065-1.023
11-0.884-0.857-0.8571.007