Model info
| Transcription factor | TGIF2 (GeneCards) | ||||||||
| Model | TGIF2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nTGACASvYRY | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 46893 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | TGIF {3.1.4.6} | ||||||||
| HGNC | HGNC:15764 | ||||||||
| EntrezGene | GeneID:60436 (SSTAR profile) | ||||||||
| UniProt ID | TGIF2_HUMAN | ||||||||
| UniProt AC | Q9GZN2 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | TGIF2 expression | ||||||||
| ReMap ChIP-seq dataset list | TGIF2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 15740.25 | 7200.25 | 8788.25 | 14174.25 |
| 02 | 1194.75 | 1185.75 | 1158.75 | 42363.75 |
| 03 | 1077.75 | 1079.75 | 42672.75 | 1072.75 |
| 04 | 45208.0 | 93.0 | 301.0 | 301.0 |
| 05 | 102.0 | 45584.0 | 118.0 | 99.0 |
| 06 | 44344.25 | 185.25 | 1187.25 | 186.25 |
| 07 | 1125.25 | 6575.25 | 32432.25 | 5770.25 |
| 08 | 7250.5 | 23557.5 | 11105.5 | 3989.5 |
| 09 | 2738.75 | 4441.75 | 1963.75 | 36758.75 |
| 10 | 4777.75 | 3699.75 | 33300.75 | 4124.75 |
| 11 | 4739.25 | 4868.25 | 4867.25 | 31428.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.316 | -0.466 | -0.267 | 0.211 |
| 02 | -2.26 | -2.268 | -2.291 | 1.306 |
| 03 | -2.363 | -2.361 | 1.313 | -2.368 |
| 04 | 1.371 | -4.787 | -3.632 | -3.632 |
| 05 | -4.697 | 1.379 | -4.555 | -4.726 |
| 06 | 1.352 | -4.112 | -2.267 | -4.107 |
| 07 | -2.32 | -0.557 | 1.039 | -0.687 |
| 08 | -0.459 | 0.719 | -0.033 | -1.056 |
| 09 | -1.432 | -0.949 | -1.764 | 1.164 |
| 10 | -0.876 | -1.131 | 1.065 | -1.023 |
| 11 | -0.884 | -0.857 | -0.857 | 1.007 |