Model info
| Transcription factor | THAP1 (GeneCards) | ||||||||
| Model | THAP1_HUMAN.H11DI.0.C | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 25 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nKvvGCCRbvKbdvnbvhKRRvRvn | ||||||||
| Best auROC (human) | 0.963 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | THAP-related factors {2.9.1} | ||||||||
| TF subfamily | THAP1 {2.9.1.0.1} | ||||||||
| HGNC | HGNC:20856 | ||||||||
| EntrezGene | GeneID:55145 (SSTAR profile) | ||||||||
| UniProt ID | THAP1_HUMAN | ||||||||
| UniProt AC | Q9NVV9 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | THAP1 expression | ||||||||
| ReMap ChIP-seq dataset list | THAP1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 7.0 | 1.0 | 62.0 | 7.0 | 17.0 | 10.0 | 120.0 | 18.0 | 14.0 | 11.0 | 132.0 | 7.0 | 2.0 | 7.0 | 76.0 | 9.0 |
| 02 | 5.0 | 14.0 | 18.0 | 3.0 | 1.0 | 18.0 | 9.0 | 1.0 | 41.0 | 215.0 | 92.0 | 42.0 | 4.0 | 29.0 | 7.0 | 1.0 |
| 03 | 16.0 | 21.0 | 8.0 | 6.0 | 74.0 | 114.0 | 58.0 | 30.0 | 35.0 | 42.0 | 26.0 | 23.0 | 6.0 | 25.0 | 11.0 | 5.0 |
| 04 | 3.0 | 8.0 | 117.0 | 3.0 | 11.0 | 13.0 | 157.0 | 21.0 | 6.0 | 5.0 | 85.0 | 7.0 | 6.0 | 6.0 | 47.0 | 5.0 |
| 05 | 4.0 | 17.0 | 2.0 | 3.0 | 9.0 | 18.0 | 3.0 | 2.0 | 24.0 | 348.0 | 5.0 | 29.0 | 6.0 | 25.0 | 2.0 | 3.0 |
| 06 | 3.0 | 30.0 | 4.0 | 6.0 | 10.0 | 347.0 | 7.0 | 44.0 | 2.0 | 5.0 | 0.0 | 5.0 | 3.0 | 22.0 | 1.0 | 11.0 |
| 07 | 4.0 | 0.0 | 13.0 | 1.0 | 283.0 | 39.0 | 59.0 | 23.0 | 4.0 | 0.0 | 7.0 | 1.0 | 9.0 | 5.0 | 51.0 | 1.0 |
| 08 | 19.0 | 45.0 | 26.0 | 210.0 | 8.0 | 7.0 | 5.0 | 24.0 | 14.0 | 41.0 | 27.0 | 48.0 | 3.0 | 10.0 | 4.0 | 9.0 |
| 09 | 8.0 | 16.0 | 10.0 | 10.0 | 15.0 | 44.0 | 28.0 | 16.0 | 25.0 | 24.0 | 9.0 | 4.0 | 32.0 | 131.0 | 97.0 | 31.0 |
| 10 | 8.0 | 3.0 | 36.0 | 33.0 | 6.0 | 13.0 | 44.0 | 152.0 | 21.0 | 9.0 | 50.0 | 64.0 | 2.0 | 3.0 | 16.0 | 40.0 |
| 11 | 3.0 | 18.0 | 8.0 | 8.0 | 5.0 | 3.0 | 3.0 | 17.0 | 33.0 | 65.0 | 15.0 | 33.0 | 6.0 | 74.0 | 30.0 | 179.0 |
| 12 | 11.0 | 3.0 | 30.0 | 3.0 | 36.0 | 45.0 | 39.0 | 40.0 | 4.0 | 4.0 | 27.0 | 21.0 | 29.0 | 26.0 | 97.0 | 85.0 |
| 13 | 35.0 | 11.0 | 27.0 | 7.0 | 21.0 | 17.0 | 33.0 | 7.0 | 58.0 | 26.0 | 96.0 | 13.0 | 38.0 | 27.0 | 71.0 | 13.0 |
| 14 | 30.0 | 70.0 | 35.0 | 17.0 | 21.0 | 22.0 | 8.0 | 30.0 | 74.0 | 59.0 | 28.0 | 66.0 | 10.0 | 14.0 | 4.0 | 12.0 |
| 15 | 30.0 | 17.0 | 54.0 | 34.0 | 13.0 | 42.0 | 33.0 | 77.0 | 5.0 | 10.0 | 24.0 | 36.0 | 20.0 | 16.0 | 28.0 | 61.0 |
| 16 | 17.0 | 18.0 | 27.0 | 6.0 | 26.0 | 28.0 | 26.0 | 5.0 | 51.0 | 32.0 | 46.0 | 10.0 | 46.0 | 41.0 | 94.0 | 27.0 |
| 17 | 66.0 | 31.0 | 19.0 | 24.0 | 29.0 | 69.0 | 4.0 | 17.0 | 71.0 | 62.0 | 18.0 | 42.0 | 10.0 | 15.0 | 5.0 | 18.0 |
| 18 | 6.0 | 9.0 | 130.0 | 31.0 | 5.0 | 4.0 | 112.0 | 56.0 | 1.0 | 11.0 | 25.0 | 9.0 | 3.0 | 7.0 | 79.0 | 12.0 |
| 19 | 5.0 | 1.0 | 9.0 | 0.0 | 6.0 | 4.0 | 20.0 | 1.0 | 43.0 | 22.0 | 272.0 | 9.0 | 6.0 | 12.0 | 88.0 | 2.0 |
| 20 | 7.0 | 12.0 | 28.0 | 13.0 | 5.0 | 11.0 | 16.0 | 7.0 | 57.0 | 40.0 | 279.0 | 13.0 | 2.0 | 3.0 | 6.0 | 1.0 |
| 21 | 22.0 | 24.0 | 15.0 | 10.0 | 9.0 | 42.0 | 10.0 | 5.0 | 44.0 | 222.0 | 35.0 | 28.0 | 9.0 | 12.0 | 6.0 | 7.0 |
| 22 | 42.0 | 8.0 | 29.0 | 5.0 | 180.0 | 29.0 | 78.0 | 13.0 | 34.0 | 7.0 | 21.0 | 4.0 | 18.0 | 6.0 | 22.0 | 4.0 |
| 23 | 95.0 | 43.0 | 116.0 | 20.0 | 15.0 | 18.0 | 13.0 | 4.0 | 28.0 | 41.0 | 72.0 | 9.0 | 3.0 | 4.0 | 14.0 | 5.0 |
| 24 | 40.0 | 29.0 | 57.0 | 15.0 | 17.0 | 40.0 | 36.0 | 13.0 | 73.0 | 64.0 | 47.0 | 31.0 | 4.0 | 7.0 | 19.0 | 8.0 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -1.454 | -3.126 | 0.679 | -1.454 | -0.599 | -1.114 | 1.336 | -0.543 | -0.788 | -1.022 | 1.431 | -1.454 | -2.584 | -1.454 | 0.881 | -1.215 |
| 02 | -1.77 | -0.788 | -0.543 | -2.234 | -3.126 | -0.543 | -1.215 | -3.126 | 0.269 | 1.918 | 1.072 | 0.293 | -1.975 | -0.074 | -1.454 | -3.126 |
| 03 | -0.658 | -0.392 | -1.328 | -1.6 | 0.855 | 1.285 | 0.613 | -0.04 | 0.112 | 0.293 | -0.181 | -0.302 | -1.6 | -0.22 | -1.022 | -1.77 |
| 04 | -2.234 | -1.328 | 1.311 | -2.234 | -1.022 | -0.86 | 1.604 | -0.392 | -1.6 | -1.77 | 0.993 | -1.454 | -1.6 | -1.6 | 0.404 | -1.77 |
| 05 | -1.975 | -0.599 | -2.584 | -2.234 | -1.215 | -0.543 | -2.234 | -2.584 | -0.26 | 2.399 | -1.77 | -0.074 | -1.6 | -0.22 | -2.584 | -2.234 |
| 06 | -2.234 | -0.04 | -1.975 | -1.6 | -1.114 | 2.396 | -1.454 | 0.339 | -2.584 | -1.77 | -4.4 | -1.77 | -2.234 | -0.346 | -3.126 | -1.022 |
| 07 | -1.975 | -4.4 | -0.86 | -3.126 | 2.192 | 0.219 | 0.63 | -0.302 | -1.975 | -4.4 | -1.454 | -3.126 | -1.215 | -1.77 | 0.485 | -3.126 |
| 08 | -0.49 | 0.361 | -0.181 | 1.895 | -1.328 | -1.454 | -1.77 | -0.26 | -0.788 | 0.269 | -0.144 | 0.425 | -2.234 | -1.114 | -1.975 | -1.215 |
| 09 | -1.328 | -0.658 | -1.114 | -1.114 | -0.721 | 0.339 | -0.108 | -0.658 | -0.22 | -0.26 | -1.215 | -1.975 | 0.023 | 1.424 | 1.124 | -0.008 |
| 10 | -1.328 | -2.234 | 0.14 | 0.054 | -1.6 | -0.86 | 0.339 | 1.572 | -0.392 | -1.215 | 0.465 | 0.711 | -2.584 | -2.234 | -0.658 | 0.244 |
| 11 | -2.234 | -0.543 | -1.328 | -1.328 | -1.77 | -2.234 | -2.234 | -0.599 | 0.054 | 0.726 | -0.721 | 0.054 | -1.6 | 0.855 | -0.04 | 1.735 |
| 12 | -1.022 | -2.234 | -0.04 | -2.234 | 0.14 | 0.361 | 0.219 | 0.244 | -1.975 | -1.975 | -0.144 | -0.392 | -0.074 | -0.181 | 1.124 | 0.993 |
| 13 | 0.112 | -1.022 | -0.144 | -1.454 | -0.392 | -0.599 | 0.054 | -1.454 | 0.613 | -0.181 | 1.114 | -0.86 | 0.193 | -0.144 | 0.814 | -0.86 |
| 14 | -0.04 | 0.8 | 0.112 | -0.599 | -0.392 | -0.346 | -1.328 | -0.04 | 0.855 | 0.63 | -0.108 | 0.741 | -1.114 | -0.788 | -1.975 | -0.938 |
| 15 | -0.04 | -0.599 | 0.542 | 0.083 | -0.86 | 0.293 | 0.054 | 0.894 | -1.77 | -1.114 | -0.26 | 0.14 | -0.439 | -0.658 | -0.108 | 0.663 |
| 16 | -0.599 | -0.543 | -0.144 | -1.6 | -0.181 | -0.108 | -0.181 | -1.77 | 0.485 | 0.023 | 0.383 | -1.114 | 0.383 | 0.269 | 1.093 | -0.144 |
| 17 | 0.741 | -0.008 | -0.49 | -0.26 | -0.074 | 0.785 | -1.975 | -0.599 | 0.814 | 0.679 | -0.543 | 0.293 | -1.114 | -0.721 | -1.77 | -0.543 |
| 18 | -1.6 | -1.215 | 1.416 | -0.008 | -1.77 | -1.975 | 1.268 | 0.578 | -3.126 | -1.022 | -0.22 | -1.215 | -2.234 | -1.454 | 0.92 | -0.938 |
| 19 | -1.77 | -3.126 | -1.215 | -4.4 | -1.6 | -1.975 | -0.439 | -3.126 | 0.316 | -0.346 | 2.153 | -1.215 | -1.6 | -0.938 | 1.027 | -2.584 |
| 20 | -1.454 | -0.938 | -0.108 | -0.86 | -1.77 | -1.022 | -0.658 | -1.454 | 0.595 | 0.244 | 2.178 | -0.86 | -2.584 | -2.234 | -1.6 | -3.126 |
| 21 | -0.346 | -0.26 | -0.721 | -1.114 | -1.215 | 0.293 | -1.114 | -1.77 | 0.339 | 1.95 | 0.112 | -0.108 | -1.215 | -0.938 | -1.6 | -1.454 |
| 22 | 0.293 | -1.328 | -0.074 | -1.77 | 1.741 | -0.074 | 0.907 | -0.86 | 0.083 | -1.454 | -0.392 | -1.975 | -0.543 | -1.6 | -0.346 | -1.975 |
| 23 | 1.104 | 0.316 | 1.303 | -0.439 | -0.721 | -0.543 | -0.86 | -1.975 | -0.108 | 0.269 | 0.828 | -1.215 | -2.234 | -1.975 | -0.788 | -1.77 |
| 24 | 0.244 | -0.074 | 0.595 | -0.721 | -0.599 | 0.244 | 0.14 | -0.86 | 0.841 | 0.711 | 0.404 | -0.008 | -1.975 | -1.454 | -0.49 | -1.328 |