We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTHRA
(GeneCards)
ModelTHA_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length17
Quality
C
Motif rank
0
ConsensusdKKhvRnhbvAGGWSMb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words75
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyThyroid hormone receptors (NR1A) {2.1.2.2}
HGNCHGNC:11796
EntrezGeneGeneID:7067
(SSTAR profile)
UniProt IDTHA_HUMAN
UniProt ACP10827
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.95291
0.0005 5.65836
0.0001 7.13856
GTEx tissue expression atlas THRA expression
ReMap ChIP-seq dataset list THRA datasets
Motifs in JASPAR
PCM
ACGT
0129.0475.21631.3278.409
027.2975.70151.9949.008
037.7535.24547.77513.227
0413.4559.2368.89442.416
0510.03440.36418.9284.675
0643.4425.47313.34111.744
0710.94625.88315.05122.12
0813.91117.78710.83231.47
097.29716.3058.09642.302
1016.41933.1820.0684.333
1162.370.07.8673.763
121.0265.81562.7124.447
130.09.23657.9236.841
1420.7522.1666.84144.24
153.19350.96815.2794.561
1654.7310.0345.9293.307
179.43512.74233.26618.557
PWM
ACGT
010.431-1.1350.504-0.725
02-0.849-1.0610.997-0.663
03-0.796-1.130.914-0.314
04-0.298-0.641-0.6750.798
05-0.5660.750.022-1.225
060.822-1.095-0.306-0.423
07-0.4880.32-0.1940.17
08-0.267-0.037-0.4970.508
09-0.849-0.119-0.7580.796
10-0.1120.560.077-1.286
111.176-2.901-0.783-1.398
12-2.231-1.0441.181-1.265
13-2.901-0.6411.103-0.905
140.109-1.798-0.9050.839
15-1.5230.978-0.18-1.245
161.048-0.566-1.028-1.497
17-0.622-0.3480.5620.003