We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTHRA
(GeneCards)
ModelTHA_HUMAN.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length10
Quality
D
Motif rank
1
ConsensusnYvAGGTCAv
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words76
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyThyroid hormone receptors (NR1A) {2.1.2.2}
HGNCHGNC:11796
EntrezGeneGeneID:7067
(SSTAR profile)
UniProt IDTHA_HUMAN
UniProt ACP10827
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.978445
0.0005 5.796375
0.0001 7.456814999999999
GTEx tissue expression atlas THRA expression
ReMap ChIP-seq dataset list THRA datasets
Motifs in JASPAR
PCM
ACGT
016.64326.23914.39326.239
026.42110.7395.75750.596
039.63236.97920.7046.2
0457.9043.43212.1790.0
050.00.55467.2045.757
060.00.068.5324.982
074.9820.00.66467.868
080.068.3115.2040.0
0968.8643.8750.7750.0
1010.73921.58930.55710.629
PWM
ACGT
01-0.9250.339-0.2290.339
02-0.954-0.499-1.0460.977
03-0.5970.6710.113-0.984
041.109-1.462-0.384-2.896
05-2.896-2.4811.256-1.046
06-2.896-2.8961.275-1.167
07-1.167-2.896-2.4151.265
08-2.8961.272-1.131-2.896
091.28-1.369-2.353-2.896
10-0.4990.1530.486-0.508