Transcription factor | Thra | ||||||||
Model | THA_MOUSE.H11DI.0.C | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 19 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvRGKKSAnnYvAGGhCAn | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | 0.946 | ||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | 4 | ||||||||
Aligned words | 505 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | Thyroid hormone receptors (NR1A) {2.1.2.2} | ||||||||
MGI | MGI:98742 | ||||||||
EntrezGene | GeneID:21833 (SSTAR profile) | ||||||||
UniProt ID | THA_MOUSE | ||||||||
UniProt AC | P63058 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Thra expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 72.0 | 11.0 | 77.0 | 9.0 | 59.0 | 24.0 | 18.0 | 18.0 | 30.0 | 14.0 | 40.0 | 5.0 | 23.0 | 20.0 | 67.0 | 12.0 |
02 | 80.0 | 11.0 | 67.0 | 26.0 | 47.0 | 2.0 | 13.0 | 7.0 | 102.0 | 6.0 | 92.0 | 2.0 | 12.0 | 3.0 | 28.0 | 1.0 |
03 | 20.0 | 7.0 | 206.0 | 8.0 | 7.0 | 4.0 | 7.0 | 4.0 | 28.0 | 4.0 | 157.0 | 11.0 | 1.0 | 1.0 | 33.0 | 1.0 |
04 | 3.0 | 2.0 | 50.0 | 1.0 | 0.0 | 8.0 | 2.0 | 6.0 | 19.0 | 10.0 | 297.0 | 77.0 | 0.0 | 1.0 | 21.0 | 2.0 |
05 | 2.0 | 1.0 | 10.0 | 9.0 | 9.0 | 4.0 | 0.0 | 8.0 | 16.0 | 41.0 | 72.0 | 241.0 | 1.0 | 21.0 | 15.0 | 49.0 |
06 | 0.0 | 25.0 | 2.0 | 1.0 | 1.0 | 60.0 | 0.0 | 6.0 | 7.0 | 70.0 | 18.0 | 2.0 | 12.0 | 241.0 | 22.0 | 32.0 |
07 | 8.0 | 7.0 | 4.0 | 1.0 | 356.0 | 15.0 | 12.0 | 13.0 | 28.0 | 5.0 | 7.0 | 2.0 | 31.0 | 1.0 | 6.0 | 3.0 |
08 | 78.0 | 140.0 | 86.0 | 119.0 | 5.0 | 6.0 | 1.0 | 16.0 | 8.0 | 4.0 | 4.0 | 13.0 | 0.0 | 6.0 | 2.0 | 11.0 |
09 | 36.0 | 22.0 | 27.0 | 6.0 | 41.0 | 43.0 | 11.0 | 61.0 | 16.0 | 49.0 | 21.0 | 7.0 | 12.0 | 58.0 | 33.0 | 56.0 |
10 | 4.0 | 27.0 | 18.0 | 56.0 | 3.0 | 45.0 | 0.0 | 124.0 | 5.0 | 26.0 | 15.0 | 46.0 | 4.0 | 38.0 | 33.0 | 55.0 |
11 | 0.0 | 2.0 | 11.0 | 3.0 | 56.0 | 38.0 | 26.0 | 16.0 | 4.0 | 16.0 | 15.0 | 31.0 | 58.0 | 59.0 | 154.0 | 10.0 |
12 | 73.0 | 2.0 | 43.0 | 0.0 | 102.0 | 0.0 | 12.0 | 1.0 | 140.0 | 0.0 | 66.0 | 0.0 | 38.0 | 2.0 | 20.0 | 0.0 |
13 | 2.0 | 0.0 | 348.0 | 3.0 | 1.0 | 0.0 | 3.0 | 0.0 | 3.0 | 0.0 | 138.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
14 | 0.0 | 0.0 | 6.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 17.0 | 2.0 | 459.0 | 12.0 | 0.0 | 0.0 | 3.0 | 0.0 |
15 | 11.0 | 2.0 | 1.0 | 3.0 | 0.0 | 0.0 | 0.0 | 2.0 | 197.0 | 68.0 | 24.0 | 179.0 | 0.0 | 3.0 | 0.0 | 9.0 |
16 | 3.0 | 187.0 | 7.0 | 11.0 | 6.0 | 52.0 | 1.0 | 14.0 | 1.0 | 21.0 | 1.0 | 2.0 | 6.0 | 150.0 | 18.0 | 19.0 |
17 | 13.0 | 1.0 | 1.0 | 1.0 | 362.0 | 8.0 | 18.0 | 22.0 | 22.0 | 1.0 | 3.0 | 1.0 | 31.0 | 4.0 | 6.0 | 5.0 |
18 | 67.0 | 136.0 | 141.0 | 84.0 | 2.0 | 7.0 | 1.0 | 4.0 | 5.0 | 13.0 | 4.0 | 6.0 | 0.0 | 11.0 | 6.0 | 12.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.83 | -1.02 | 0.896 | -1.213 | 0.632 | -0.258 | -0.541 | -0.541 | -0.038 | -0.786 | 0.246 | -1.768 | -0.3 | -0.437 | 0.758 | -0.936 |
02 | 0.934 | -1.02 | 0.758 | -0.179 | 0.406 | -2.582 | -0.858 | -1.452 | 1.176 | -1.598 | 1.074 | -2.582 | -0.936 | -2.232 | -0.106 | -3.124 |
03 | -0.437 | -1.452 | 1.877 | -1.326 | -1.452 | -1.973 | -1.452 | -1.973 | -0.106 | -1.973 | 1.606 | -1.02 | -3.124 | -3.124 | 0.056 | -3.124 |
04 | -2.232 | -2.582 | 0.467 | -3.124 | -4.398 | -1.326 | -2.582 | -1.598 | -0.488 | -1.112 | 2.243 | 0.896 | -4.398 | -3.124 | -0.39 | -2.582 |
05 | -2.582 | -3.124 | -1.112 | -1.213 | -1.213 | -1.973 | -4.398 | -1.326 | -0.656 | 0.271 | 0.83 | 2.034 | -3.124 | -0.39 | -0.719 | 0.447 |
06 | -4.398 | -0.218 | -2.582 | -3.124 | -3.124 | 0.648 | -4.398 | -1.598 | -1.452 | 0.802 | -0.541 | -2.582 | -0.936 | 2.034 | -0.344 | 0.025 |
07 | -1.326 | -1.452 | -1.973 | -3.124 | 2.424 | -0.719 | -0.936 | -0.858 | -0.106 | -1.768 | -1.452 | -2.582 | -0.006 | -3.124 | -1.598 | -2.232 |
08 | 0.909 | 1.492 | 1.006 | 1.33 | -1.768 | -1.598 | -3.124 | -0.656 | -1.326 | -1.973 | -1.973 | -0.858 | -4.398 | -1.598 | -2.582 | -1.02 |
09 | 0.142 | -0.344 | -0.142 | -1.598 | 0.271 | 0.318 | -1.02 | 0.665 | -0.656 | 0.447 | -0.39 | -1.452 | -0.936 | 0.615 | 0.056 | 0.58 |
10 | -1.973 | -0.142 | -0.541 | 0.58 | -2.232 | 0.363 | -4.398 | 1.371 | -1.768 | -0.179 | -0.719 | 0.385 | -1.973 | 0.195 | 0.056 | 0.562 |
11 | -4.398 | -2.582 | -1.02 | -2.232 | 0.58 | 0.195 | -0.179 | -0.656 | -1.973 | -0.656 | -0.719 | -0.006 | 0.615 | 0.632 | 1.587 | -1.112 |
12 | 0.843 | -2.582 | 0.318 | -4.398 | 1.176 | -4.398 | -0.936 | -3.124 | 1.492 | -4.398 | 0.743 | -4.398 | 0.195 | -2.582 | -0.437 | -4.398 |
13 | -2.582 | -4.398 | 2.401 | -2.232 | -3.124 | -4.398 | -2.232 | -4.398 | -2.232 | -4.398 | 1.478 | -4.398 | -4.398 | -4.398 | -3.124 | -4.398 |
14 | -4.398 | -4.398 | -1.598 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -0.597 | -2.582 | 2.678 | -0.936 | -4.398 | -4.398 | -2.232 | -4.398 |
15 | -1.02 | -2.582 | -3.124 | -2.232 | -4.398 | -4.398 | -4.398 | -2.582 | 1.833 | 0.773 | -0.258 | 1.737 | -4.398 | -2.232 | -4.398 | -1.213 |
16 | -2.232 | 1.781 | -1.452 | -1.02 | -1.598 | 0.506 | -3.124 | -0.786 | -3.124 | -0.39 | -3.124 | -2.582 | -1.598 | 1.561 | -0.541 | -0.488 |
17 | -0.858 | -3.124 | -3.124 | -3.124 | 2.44 | -1.326 | -0.541 | -0.344 | -0.344 | -3.124 | -2.232 | -3.124 | -0.006 | -1.973 | -1.598 | -1.768 |
18 | 0.758 | 1.463 | 1.499 | 0.983 | -2.582 | -1.452 | -3.124 | -1.973 | -1.768 | -0.858 | -1.973 | -1.598 | -4.398 | -1.02 | -1.598 | -0.936 |