We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorThra
ModelTHA_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
C
Motif rank
0
ConsensusnvRGKKSAnnYvAGGhCAn
Best auROC (human)
Best auROC (mouse)0.946
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words505
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyThyroid hormone receptors (NR1A) {2.1.2.2}
MGIMGI:98742
EntrezGeneGeneID:21833
(SSTAR profile)
UniProt IDTHA_MOUSE
UniProt ACP63058
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.222760000000001
0.0005 10.25331
0.0001 14.51296
GTEx tissue expression atlas Thra expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0172.011.077.09.059.024.018.018.030.014.040.05.023.020.067.012.0
0280.011.067.026.047.02.013.07.0102.06.092.02.012.03.028.01.0
0320.07.0206.08.07.04.07.04.028.04.0157.011.01.01.033.01.0
043.02.050.01.00.08.02.06.019.010.0297.077.00.01.021.02.0
052.01.010.09.09.04.00.08.016.041.072.0241.01.021.015.049.0
060.025.02.01.01.060.00.06.07.070.018.02.012.0241.022.032.0
078.07.04.01.0356.015.012.013.028.05.07.02.031.01.06.03.0
0878.0140.086.0119.05.06.01.016.08.04.04.013.00.06.02.011.0
0936.022.027.06.041.043.011.061.016.049.021.07.012.058.033.056.0
104.027.018.056.03.045.00.0124.05.026.015.046.04.038.033.055.0
110.02.011.03.056.038.026.016.04.016.015.031.058.059.0154.010.0
1273.02.043.00.0102.00.012.01.0140.00.066.00.038.02.020.00.0
132.00.0348.03.01.00.03.00.03.00.0138.00.00.00.01.00.0
140.00.06.00.00.00.00.00.017.02.0459.012.00.00.03.00.0
1511.02.01.03.00.00.00.02.0197.068.024.0179.00.03.00.09.0
163.0187.07.011.06.052.01.014.01.021.01.02.06.0150.018.019.0
1713.01.01.01.0362.08.018.022.022.01.03.01.031.04.06.05.0
1867.0136.0141.084.02.07.01.04.05.013.04.06.00.011.06.012.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.83-1.020.896-1.2130.632-0.258-0.541-0.541-0.038-0.7860.246-1.768-0.3-0.4370.758-0.936
020.934-1.020.758-0.1790.406-2.582-0.858-1.4521.176-1.5981.074-2.582-0.936-2.232-0.106-3.124
03-0.437-1.4521.877-1.326-1.452-1.973-1.452-1.973-0.106-1.9731.606-1.02-3.124-3.1240.056-3.124
04-2.232-2.5820.467-3.124-4.398-1.326-2.582-1.598-0.488-1.1122.2430.896-4.398-3.124-0.39-2.582
05-2.582-3.124-1.112-1.213-1.213-1.973-4.398-1.326-0.6560.2710.832.034-3.124-0.39-0.7190.447
06-4.398-0.218-2.582-3.124-3.1240.648-4.398-1.598-1.4520.802-0.541-2.582-0.9362.034-0.3440.025
07-1.326-1.452-1.973-3.1242.424-0.719-0.936-0.858-0.106-1.768-1.452-2.582-0.006-3.124-1.598-2.232
080.9091.4921.0061.33-1.768-1.598-3.124-0.656-1.326-1.973-1.973-0.858-4.398-1.598-2.582-1.02
090.142-0.344-0.142-1.5980.2710.318-1.020.665-0.6560.447-0.39-1.452-0.9360.6150.0560.58
10-1.973-0.142-0.5410.58-2.2320.363-4.3981.371-1.768-0.179-0.7190.385-1.9730.1950.0560.562
11-4.398-2.582-1.02-2.2320.580.195-0.179-0.656-1.973-0.656-0.719-0.0060.6150.6321.587-1.112
120.843-2.5820.318-4.3981.176-4.398-0.936-3.1241.492-4.3980.743-4.3980.195-2.582-0.437-4.398
13-2.582-4.3982.401-2.232-3.124-4.398-2.232-4.398-2.232-4.3981.478-4.398-4.398-4.398-3.124-4.398
14-4.398-4.398-1.598-4.398-4.398-4.398-4.398-4.398-0.597-2.5822.678-0.936-4.398-4.398-2.232-4.398
15-1.02-2.582-3.124-2.232-4.398-4.398-4.398-2.5821.8330.773-0.2581.737-4.398-2.232-4.398-1.213
16-2.2321.781-1.452-1.02-1.5980.506-3.124-0.786-3.124-0.39-3.124-2.582-1.5981.561-0.541-0.488
17-0.858-3.124-3.124-3.1242.44-1.326-0.541-0.344-0.344-3.124-2.232-3.124-0.006-1.973-1.598-1.768
180.7581.4631.4990.983-2.582-1.452-3.124-1.973-1.768-0.858-1.973-1.598-4.398-1.02-1.598-0.936