Model info
| Transcription factor | Thra | ||||||||
| Model | THA_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRGKKYAnnYvAGGhCA | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.911 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
| TF subfamily | Thyroid hormone receptors (NR1A) {2.1.2.2} | ||||||||
| MGI | MGI:98742 | ||||||||
| EntrezGene | GeneID:21833 (SSTAR profile) | ||||||||
| UniProt ID | THA_MOUSE | ||||||||
| UniProt AC | P63058 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Thra expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 185.0 | 73.0 | 197.0 | 45.0 |
| 02 | 275.0 | 8.0 | 187.0 | 30.0 |
| 03 | 57.0 | 7.0 | 420.0 | 16.0 |
| 04 | 27.0 | 12.0 | 381.0 | 80.0 |
| 05 | 27.0 | 57.0 | 92.0 | 324.0 |
| 06 | 12.0 | 395.0 | 40.0 | 53.0 |
| 07 | 420.0 | 31.0 | 17.0 | 32.0 |
| 08 | 88.0 | 119.0 | 114.0 | 179.0 |
| 09 | 95.0 | 188.0 | 91.0 | 126.0 |
| 10 | 26.0 | 142.0 | 35.0 | 297.0 |
| 11 | 143.0 | 94.0 | 221.0 | 42.0 |
| 12 | 361.0 | 3.0 | 128.0 | 8.0 |
| 13 | 10.0 | 2.0 | 484.0 | 4.0 |
| 14 | 7.0 | 9.0 | 464.0 | 20.0 |
| 15 | 200.0 | 74.0 | 40.0 | 186.0 |
| 16 | 26.0 | 404.0 | 26.0 | 44.0 |
| 17 | 432.0 | 15.0 | 28.0 | 25.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.388 | -0.529 | 0.45 | -1.0 |
| 02 | 0.782 | -2.584 | 0.399 | -1.389 |
| 03 | -0.771 | -2.694 | 1.203 | -1.975 |
| 04 | -1.489 | -2.234 | 1.106 | -0.439 |
| 05 | -1.489 | -0.771 | -0.302 | 0.945 |
| 06 | -2.234 | 1.142 | -1.114 | -0.841 |
| 07 | 1.203 | -1.358 | -1.92 | -1.328 |
| 08 | -0.346 | -0.049 | -0.091 | 0.355 |
| 09 | -0.271 | 0.404 | -0.313 | 0.008 |
| 10 | -1.525 | 0.126 | -1.242 | 0.858 |
| 11 | 0.133 | -0.281 | 0.565 | -1.067 |
| 12 | 1.053 | -3.325 | 0.023 | -2.584 |
| 13 | -2.394 | -3.573 | 1.345 | -3.126 |
| 14 | -2.694 | -2.484 | 1.303 | -1.77 |
| 15 | 0.465 | -0.516 | -1.114 | 0.393 |
| 16 | -1.525 | 1.165 | -1.525 | -1.022 |
| 17 | 1.231 | -2.034 | -1.454 | -1.561 |