We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorTHRB
(GeneCards)
ModelTHB_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length17
Quality
C
Motif rank
0
ConsensusvRvSYvMbvKSAGGTCA
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words38
TF familyThyroid hormone receptor-related factors (NR1) {2.1.2}
TF subfamilyThyroid hormone receptors (NR1A) {2.1.2.2}
HGNCHGNC:11799
EntrezGeneGeneID:7068
(SSTAR profile)
UniProt IDTHB_HUMAN
UniProt ACP10828
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.39761
0.0005 5.27046
0.0001 7.085260000000001
GTEx tissue expression atlas THRB expression
ReMap ChIP-seq dataset list THRB datasets
Motifs in JASPAR
PCM
ACGT
018.0146.82617.7492.909
0220.1830.011.0414.274
035.46110.32918.0461.662
043.91810.80418.6392.137
050.010.3294.98620.183
065.10517.2159.8543.324
0723.5074.2743.7993.918
082.73112.1114.6036.055
0911.2798.90413.6531.662
100.02.1378.31125.05
113.32416.26514.841.068
1234.4290.01.0680.0
130.00.032.8862.612
140.00.034.4291.068
159.8540.00.83124.813
161.929.0873.4431.068
1730.3935.1050.00.0
PWM
ACGT
01-0.092-0.2350.646-0.944
020.769-2.3930.2-0.637
03-0.430.1390.662-1.341
04-0.7080.180.693-1.171
05-2.3930.139-0.5080.769
06-0.4880.6170.096-0.84
070.916-0.637-0.733-0.708
08-0.9920.2860.462-0.341
090.220.0030.398-1.341
10-2.393-1.171-0.0590.977
11-0.840.5630.477-1.606
121.286-2.393-1.606-2.393
13-2.393-2.3931.241-1.025
14-2.393-2.3931.286-1.606
150.096-2.393-1.7350.968
16-1.2521.122-0.812-1.606
171.164-0.488-2.393-2.393