Transcription factor | THRB (GeneCards) | ||||||||
Model | THB_HUMAN.H11MO.0.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 17 | ||||||||
Quality | C | ||||||||
Motif rank | 0 | ||||||||
Consensus | vRvSYvMbvKSAGGTCA | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 38 | ||||||||
TF family | Thyroid hormone receptor-related factors (NR1) {2.1.2} | ||||||||
TF subfamily | Thyroid hormone receptors (NR1A) {2.1.2.2} | ||||||||
HGNC | HGNC:11799 | ||||||||
EntrezGene | GeneID:7068 (SSTAR profile) | ||||||||
UniProt ID | THB_HUMAN | ||||||||
UniProt AC | P10828 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | THRB expression | ||||||||
ReMap ChIP-seq dataset list | THRB datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 8.014 | 6.826 | 17.749 | 2.909 |
02 | 20.183 | 0.0 | 11.041 | 4.274 |
03 | 5.461 | 10.329 | 18.046 | 1.662 |
04 | 3.918 | 10.804 | 18.639 | 2.137 |
05 | 0.0 | 10.329 | 4.986 | 20.183 |
06 | 5.105 | 17.215 | 9.854 | 3.324 |
07 | 23.507 | 4.274 | 3.799 | 3.918 |
08 | 2.731 | 12.11 | 14.603 | 6.055 |
09 | 11.279 | 8.904 | 13.653 | 1.662 |
10 | 0.0 | 2.137 | 8.311 | 25.05 |
11 | 3.324 | 16.265 | 14.84 | 1.068 |
12 | 34.429 | 0.0 | 1.068 | 0.0 |
13 | 0.0 | 0.0 | 32.886 | 2.612 |
14 | 0.0 | 0.0 | 34.429 | 1.068 |
15 | 9.854 | 0.0 | 0.831 | 24.813 |
16 | 1.9 | 29.087 | 3.443 | 1.068 |
17 | 30.393 | 5.105 | 0.0 | 0.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.092 | -0.235 | 0.646 | -0.944 |
02 | 0.769 | -2.393 | 0.2 | -0.637 |
03 | -0.43 | 0.139 | 0.662 | -1.341 |
04 | -0.708 | 0.18 | 0.693 | -1.171 |
05 | -2.393 | 0.139 | -0.508 | 0.769 |
06 | -0.488 | 0.617 | 0.096 | -0.84 |
07 | 0.916 | -0.637 | -0.733 | -0.708 |
08 | -0.992 | 0.286 | 0.462 | -0.341 |
09 | 0.22 | 0.003 | 0.398 | -1.341 |
10 | -2.393 | -1.171 | -0.059 | 0.977 |
11 | -0.84 | 0.563 | 0.477 | -1.606 |
12 | 1.286 | -2.393 | -1.606 | -2.393 |
13 | -2.393 | -2.393 | 1.241 | -1.025 |
14 | -2.393 | -2.393 | 1.286 | -1.606 |
15 | 0.096 | -2.393 | -1.735 | 0.968 |
16 | -1.252 | 1.122 | -0.812 | -1.606 |
17 | 1.164 | -0.488 | -2.393 | -2.393 |